Paenibacillus polymyxa SC2: PPSC2_05990
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Entry
PPSC2_05990 CDS
T01335
Symbol
ykoU
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPSC2_05990 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_05990 (ykoU)
Enzymes [BR:
ppm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPSC2_05990 (ykoU)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPSC2_05990 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ADO55221
UniProt:
E3EIA8
LinkDB
All DBs
Position
complement(1385017..1385919)
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AA seq
300 aa
AA seq
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MGRAVKGTITIEGHEIAITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHQRLLTVIR
WPHGIHGDFFYQKNAPHPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHLA
GSQLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRPGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQIGDLIDKVPPQPVEDLLKHMRSKTHPT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagctgttaaaggtacgattacgattgaaggtcacgaaattgcgatcacaaac
ccggataaaccgctgtggcccgaagcaggtgtaactaaggcgctatatcttcgcaagctt
gcggtattggcccccttcctgctcaaatattgccatcagcgtctactgactgtcatccgt
tggccacatgggattcatggggactttttttatcagaaaaatgccccacatcctcggcca
gactacattgaaaccgctctgcatgatggcattgagtatatcgtgcttggaaagctgccc
caactactctggctcggtaatcaagctgcgttggaatttcatccctctctgcacctagca
ggaagccaactgccctgtgaatggatgattgatcttgatccatccagagaggtcgagcca
cgcattatggaggctgcctccattgtaggcgaagtattagcttcgcttgggttggactct
gtccccaaaacctccggggccacgggtgtacaaattatcgtcccgatccgtccaggcata
acctttgacgagcttcgcagcatcggactgttggttggacaatttgtaacggaaaagcac
ccgcatctattcacactggaacgattaaagaaggatcgcggaacagccatttattttgat
tatttgcagcattatcagggaaaaaccttagccgctccttatactccacgggcacgtccc
ggcgctacggtctccactccactaacctgggaagaggtacggcaggatgtgtcaccactg
gattaccatttgctgaatattgaagaacggttaaaccagataggcgacttgatcgacaag
gttcctccccagcctgtagaggacctcctcaagcatatgcgttccaaaacacacccaacc
taa
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