Paenibacillus polymyxa SC2: PPSC2_08350
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Entry
PPSC2_08350 CDS
T01335
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03030
DNA replication
ppm03410
Base excision repair
ppm03420
Nucleotide excision repair
ppm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPSC2_08350 (polA)
03410 Base excision repair
PPSC2_08350 (polA)
03420 Nucleotide excision repair
PPSC2_08350 (polA)
03440 Homologous recombination
PPSC2_08350 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppm03032
]
PPSC2_08350 (polA)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_08350 (polA)
Enzymes [BR:
ppm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPSC2_08350 (polA)
DNA replication proteins [BR:
ppm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPSC2_08350 (polA)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PPSC2_08350 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPSC2_08350 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
DNA_pol_A_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ADO55740
UniProt:
E3EEQ3
LinkDB
All DBs
Position
1869612..1872266
Genome browser
AA seq
884 aa
AA seq
DB search
MDKLMLIDGNSIIYRAFFAMPPLTNSSGQQTNAVYGFTTMLLRLLEEHKPTHILVAFDAG
KITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTLSRTA
DEAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQIIDLKG
LMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELKGKMKERVETHADDARMSKE
LATIYRDVTLDKQLEDVVFSGLQAETAGPALAKLEFKSLLERLSLSGEVGSAGVGVEEAA
ADVTVLNEERISELVEVLNNINVLHVETHGDNPHHAEIVGLIFAATGRQFFMTLNVLQSD
AATPIREWLADPERKKRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSG
LAAKYGLSSIRPDDEVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELEKTEMHK
LFHELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSIAGVEFNLNSPK
QLGEILFDKLGLPVIKKTKTGYSTDAEVLEKLAPYHDIVQNILQYRTIAKLQSTYVEGLL
KEISEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAA
DYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGI
VYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRY
LPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDEL
VFEVPPEEMETMKELVPATMEAALKLAVPLKAEVSYGSNWYEAK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggataaactcatgcttatagatggtaacagtatcatataccgggcgttttttgctatg
ccgccgttgacgaattcaagcggacagcagacgaacgcggtgtatggatttacgacaatg
ttattgcggcttttggaggagcacaaaccaacacatatcttggttgcctttgatgctggt
aaaattacgtttcgccataaagggtacgaggattacaaaggtggacgggagaaaacgccg
ccggagctgtcccagcaatttccactgctgaaagagctattgaccgcctttggcattgcc
caatttgaactggatggctatgaggcagacgatattataggcaccctctccagaacagcg
gacgaagcgggtttcaatgtgctggttgtgactggcgacaaggacatgcttcaattggct
tcagaccatgtcacggtcggcttaacccgcaaaggggttaccgaggtggaaacgtacgga
cctgagcagattcaggaacgttacggcttgaagccgctgcaaatcatagaccttaagggt
ctgatgggcgatacgtcggataatattcctggcattccgggcgtgggtgagaaaacagcg
ctcaagctactgcatcaatatggttcagtcgaagaggtgctggcgcacacggatgagctg
aagggcaaaatgaaagaacgcgtggagacacatgctgacgatgcacgaatgagcaaggaa
ttggcgactatttatcgggatgtaacgttggacaaacagctggaagatgtagttttcagc
gggctgcaggctgagacggctggaccagctctggcgaagctggagttcaagtccctgctg
gagcgtttatccttatcgggcgaggttggcagtgctggagttggcgtagaggaagccgct
gcagacgtgactgtattgaatgaagagcgtatcagcgaattggtagaagtgctgaataac
ataaatgtgctgcatgtggagacgcatggtgataatccgcatcatgctgaaattgtaggc
ttaatatttgccgcaacggggcggcagttctttatgacactgaatgttctacaaagtgat
gcagctacccctattcgcgaatggcttgccgatcctgaacgcaaaaaacgcggtcatgat
ttgcaccgtacagacttggctttacactggcatggaattgagtttgccggagccgaattt
gatgtgcaactggccggatacttgctagatccgacagacgcgaatcagacgttgagtgga
ctggcagccaagtatggcttgtcatcgattcgtccagatgacgaagtgtttggtaaagga
gctaaatataaagttcctgaaatggatgtactatccgatcatgtggcacgtaaggcagcg
gtgatcgaagcattggtacccgtgcagcaggcggaactggaaaagacggaaatgcacaag
ctgtttcatgagctggagatgccgttatcacgcattctggcggatatggagaagcagggg
attttggtgaatgtagaggaactgcgcgctttgggtaaagaatttgaagcccagattgca
acgttggtgggtgagatctacagcattgcaggggtagagttcaatcttaattcgcccaag
cagttgggtgagattttgtttgataaactgggtctgccagttattaaaaagacaaaaacc
gggtactcgaccgatgcagaggtactggaaaagcttgctccatatcatgatattgtgcaa
aatattttgcaatatcgcaccattgccaaactccaatcgacgtatgtcgaaggattgctt
aaagaaatttcggagaagacaggtaaagtgcatacgtatttccggcagacggttgcggca
accggacgcttgagcagtcaatttccgaatttgcagaatatcccgatccgtctcgaagaa
ggacgcaaaatccgcaaagtatttgttccctcggagccgggctggtcgattttggcggct
gactattcacaaatcgagctgcgggtgctggctgatatttcggatgatgagcgtttgaaa
gaggcttttgtccacgatatggacatccataccaagaccgcatccgatgtgttcggtgta
ccagcagaagctgtagattccgatatgcgccgttccgcaaaggcggtcaactttgggatc
gtttacggaattagcgactatggtctgtcgcaaaatttgaatattacccggaaggaagcg
gctcgctttatcgaccagtattttgacgtgttccaaggtgttcgccgttacatggatgat
attgtgaaggatgcgaagagagatggatacgtaaaaacgctgctggaacgcagacgatat
ttgcctgagattaacgccagcaatttcaaccagcgttcgttcgctgagcgtacagcgatg
aatacgccgattcaaggtaccgcagccgatattatcaagctggcgatggtgcagatggac
gcagcgctgcgtgaacgcaatcttcgcagccgcatgctgctacaagtacatgatgagctt
gtattcgaggttccgcctgaggaaatggagacgatgaaagagcttgtcccggctaccatg
gaagctgcattaaaattggctgtgccgcttaaagcggaagtcagctatggcagcaattgg
tatgaggccaagtaa
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