Paenibacillus polymyxa SC2: PPSC2_08355
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Entry
PPSC2_08355 CDS
T01335
Symbol
mutM1
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPSC2_08355 (mutM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_08355 (mutM1)
Enzymes [BR:
ppm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PPSC2_08355 (mutM1)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PPSC2_08355 (mutM1)
DNA repair and recombination proteins [BR:
ppm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPSC2_08355 (mutM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ADO55741
UniProt:
E3EEQ4
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All DBs
Position
1872338..1873168
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AA seq
276 aa
AA seq
DB search
MPELPEVETIKRTLNELIVDKHIDHVTVNLPRIIQRPDDIDAFAMELAGHRITGVERRGK
FLRILLDGLVLVSHLRMEGRYGLYSQDDPVEKHTHVIFHFKDGTELRYQDVRQFGTMHLF
PAGQDLLEKPLNKLGLEPMDEAFTPEMLRAAVGTRSTSIKAALLNQSYVVGIGNIYVDES
LFKAGIHPAQPAKSLTDSQFRVLHEAIVSTLGASIQVGGSSIKSFVNGQGKTGDFQHQLQ
IYGRNAKPCMNCGTLIEKSVVAGRGTHHCPVCQPLR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccggaagtagaaaccattaaacgaacactaaacgagcttatcgttgat
aaacatatagatcatgtaaccgtaaatttgccgcgtattatccaacgtcccgatgatatc
gacgcatttgcgatggaattggccggccaccggattacaggagtggagagacgcggtaag
tttcttcgaattttgctggacgggctggtgcttgtctcccatcttcgaatggaaggacgc
tatggattgtattcacaagatgatcctgtggaaaagcatacccatgtcatctttcatttt
aaagatggtacggagctgcgttatcaggatgtgcgccagttcggcacgatgcacttattt
ccggcaggacaggatttgctggaaaagccgctaaacaaactcggtttggaaccgatggac
gaggcttttacacctgaaatgctgcgtgccgctgttggaactcgttcgacttcgatcaag
gcagcgctgttaaaccagtcatatgtggtaggcatcgggaatatttatgtagatgaatcg
ttatttaaggcagggattcatccggcacagccagccaaaagcttaacggatagtcaattt
cgcgtactgcatgaagctattgtctccacgctgggcgcgtcgattcaggttggtggctcg
tccatcaaatcattcgtcaacggacagggcaaaacgggcgatttccagcatcagttgcaa
atttatggacgtaacgcgaagccttgcatgaactgtggtacattgatcgaaaaatccgtc
gtagccggacgtggcacacatcattgcccggtctgccagcctttgcgctaa
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