Pollicipes pollicipes (gooseneck barnacle): 119111538
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Entry
119111538 CDS
T08250
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ppoi
Pollicipes pollicipes (gooseneck barnacle)
Pathway
ppoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119111538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppoi03000
]
119111538
03019 Messenger RNA biogenesis [BR:
ppoi03019
]
119111538
04121 Ubiquitin system [BR:
ppoi04121
]
119111538
Enzymes [BR:
ppoi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119111538
Transcription factors [BR:
ppoi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119111538
Messenger RNA biogenesis [BR:
ppoi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119111538
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119111538
Ubiquitin system [BR:
ppoi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119111538
BRITE hierarchy
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-UDP
Nup35_RRM_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
119111538
NCBI-ProteinID:
XP_037091246
EnsemblRapid:
LOC119111538
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MAYDMDDQAECPLCMEQFEMDDLSFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYSEN
PADFKPLTAEELQKIKAEKKQKDLQKKQKMSENRKHLANVRVVQKNLVFVVGLSPRLADP
DVLKRHEYFGKFGKIHKVVINHSTQYAGSQGPSASAYVTYYRSEDALRAIEAVNNVTVEN
RTLKASLGTTKYCSHFMKNQPCPKTDCMYLHEPGDEAASFTKEAMQQGKHQEYEKKLHDQ
LYQQHQNQINRAKDRRSHQSQSESGSVPIPPGSERVSSAENSPPDGGSAGSAGSSGGGGG
GGGSGGGGGSSTSNGSWPLLQATKKSRGRKGRKRNAGGQSPSVVVASNHSDDENSAGSRE
RQTDSSRSTPLSQSAPPLQVGPAATPPPEPPAQPSPPPPPPAPAPVPVPVPAPETTAPTP
PPEEDDCPLDGADDDLDFDPFEETKKGLGALLEHLCGSKMLPFLNNSAMNGMNGLNGLSR
LPPGRPRALSPPDSLFSDLSSMMMHGQSKPPPPPPLQAACHDALKDWHGLKKHFPNINIS
FSSAHF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgatatggatgaccaggctgagtgcccgctgtgtatggaacagtttgagatg
gatgatcttagcttcttcccttgcacgtgcgggtaccagatctgccgtttctgctggcac
cggatccgcaccgacgagaacggcctgtgccccgcctgccgaaaaccttactcggagaac
ccggccgacttcaagccgctcaccgccgaggagctgcagaagatcaaggccgagaagaag
cagaaggacctgcagaagaagcagaagatgagcgagaaccgcaagcacctggccaacgtg
cgggtggtgcagaagaacctggtgttcgtggtggggctgtcgccgcggctggccgacccg
gacgtgttaaaacgtcacgagtatttcggcaagttcggcaagatccataaagtagtgata
aaccatagcacgcaatatgctggctctcagggccccagcgctagcgcctacgtcacctac
taccggtcggaggacgcgttacgggccatcgaggccgtcaacaacgtgacggtggagaac
cgcacgctgaaggcgtcgctaggcactaccaagtactgttcgcactttatgaaaaaccag
ccctgtccgaagacggactgcatgtacctgcatgaaccgggcgatgaggcggccagcttc
acgaaggaggccatgcagcagggaaagcaccaagagtacgagaaaaagcttcacgatcag
ctttatcaacaacaccaaaatcaaatcaaccgggcgaaagaccggcggtcccaccagtcg
cagtctgagtccggctcggtgcccatcccgcccggctcggagcgcgtgagcagcgctgag
aacagccctcccgacggcggctcggccggctcggccggctcgagcggcggcggtggcggc
ggcggcggtagtggcggcggcggcggcagctccacctccaacggtagctggccgctgctg
caggcgaccaagaagtcgcgcggccgcaagggtcgtaagcggaacgctggcggccagagt
ccgagcgtggtggtggcgagcaatcactcggacgacgagaacagcgccggctcgcgggag
cgccagaccgacagcagtcggtcgacgccgctctcgcagtcggccccgccgctgcaggtg
gggccggccgccacgccgccgcccgagccgcccgctcagccgtctcctccgccgcctccg
ccggcgccggcgcccgtgcccgtgcccgtgccggcgcccgagacgaccgcccccacgccg
ccgcccgaggaggacgactgcccgctggacggcgccgacgacgatctcgactttgacccg
ttcgaggagaccaagaaggggctgggtgcgctgctggagcatctatgtggcagcaagatg
ctgcccttcctcaataatagcgctatgaacggtatgaacgggttgaacggactgagccgg
ctgccgccgggtcggccgcgggcgctctctccgccggacagcctcttctcggacctctcc
agcatgatgatgcacggccagagcaagccgccgccgccgccgccgctgcaggcggcgtgt
catgacgctctcaaggactggcacggcctgaagaagcacttccccaacatcaacatctcg
ttcagcagcgcacacttctag
DBGET
integrated database retrieval system
