KEGG   PATHWAY: ppol00020
Entry
ppol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus polymyxa CR1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppol00020  Citrate cycle (TCA cycle)
ppol00020

Module
ppol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppol00020]
ppol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppol00020]
ppol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppol00020]
ppol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppol00020]
Other DBs
GO: 0006099
Organism
Paenibacillus polymyxa CR1 [GN:ppol]
Gene
X809_08635  citrate synthase [KO:K01647] [EC:2.3.3.1]
X809_03535  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
X809_08640  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
X809_07620  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
X809_07625  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
X809_08755  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X809_29940  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X809_31385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
X809_10145  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
X809_10140  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
X809_36455  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
X809_36450  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
X809_36460  succinate dehydrogenase [KO:K00241]
X809_29460  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
X809_08645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X809_41725  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
X809_29950  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
X809_29945  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
X809_14645  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
X809_31260  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
X809_31265  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppol00010  Glycolysis / Gluconeogenesis
ppol00053  Ascorbate and aldarate metabolism
ppol00061  Fatty acid biosynthesis
ppol00071  Fatty acid degradation
ppol00190  Oxidative phosphorylation
ppol00220  Arginine biosynthesis
ppol00250  Alanine, aspartate and glutamate metabolism
ppol00280  Valine, leucine and isoleucine degradation
ppol00350  Tyrosine metabolism
ppol00470  D-Amino acid metabolism
ppol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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