Psychroserpens ponticola: MUN68_000040
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Entry
MUN68_000040 CDS
T09473
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppon
Psychroserpens ponticola
Pathway
ppon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUN68_000040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppon03400
]
MUN68_000040 (mfd)
Enzymes [BR:
ppon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN68_000040 (mfd)
DNA repair and recombination proteins [BR:
ppon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUN68_000040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_31
SBP_bac_3
UB2H
Motif
Other DBs
NCBI-ProteinID:
WCO01898
LinkDB
All DBs
Position
complement(6664..10002)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSKTILSQTYAQALQMQNLQTTIVQTGAKSHIKGLVGSSLSLVISEAFKACDLPFLLIFN
DKEEAAFYLNDLEMLLNDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEKVVTRRELEKNTLKISVGDELSLDFVNEVLFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTEQIKKIGIIPNVANKFLEENRQ
SFLKYIAQKTVVFSKNTDLLFSRIDAFFGKAEDTFKALSSELKHSEPEELFCNSELLKRQ
LIDFSLVEFGPSTSFSNQASKLIEFKTSPQPSFNKQFNLLIEDLNNNHDKGYTNYIACVS
EQQAKRFHDIFEDVEEDVHYKTVVLSLYQGFIDHDQKITCYTDHQIFERYHKFHLKNGYA
KKQAITLKELTNLDIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLVYGERDVLYLSIH
SLHKITKFNGKDGKPPKVYKLGSKAWKTLKQKTKSRVKEIAFNLIKVYAKRKLEKGYQYK
PDSYLQHELEASFIYEDTPDQITSTADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFK
AVDNGKQVAILVPTTILAYQHNKTISERLKDFPVTVDYLNRFRTAKEKRETIEKLEKGHV
DIIIGTHQLVNKKVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQ
FSLMAARDLSVITTAPPNRYPIESNVIRFSEETIRDAVTYEIQRGGQIFFIHNRIENIKE
VAGMIQRLVPDAKIGIGHGQMEGKKLEHLMLAFMNGEFDVLVSTTIVESGLDVPNANTIF
INNANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTNDARKRITALEQFTELGSGFN
IAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFKDLYQDDGKEKDY
VKDITIDTDFELLFPDNYVNNITERLNLYTKLNTLKTEAELKVFETEIIDRFGELPIQVI
DLLNSVRVKWIATKIGLEKIIMKKGRLVGYFINDQQSPFYQSANFTKVLAYVQTRPKDCK
MKEKQTRNGLRLLLTFEQIKSVKQALSRLQDI
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaccattctctcgcaaacgtatgcacaggctttgcaaatgcaaaatctgcag
actactattgttcaaactggagcaaaatcacacataaaaggtttagttggctcctcatta
tccttagttattagtgaagcatttaaagcttgtgaccttccttttttattgatatttaat
gataaagaagaagcagctttttatctcaatgatttagaaatgctacttaatgataaggat
gtcctattttatcctggaagttatcgaagaccatatcaaattgaagaaaccgataatgca
aatgtcttattaagagcagaagttttaaaccgaattaactctcgtaaaaaaccagcgatt
attgtcacttatcctgatgcgctgttcgaaaaagtagttacgcgtcgtgaactggaaaag
aatactttaaagatttctgttggtgatgagttatctctcgattttgttaatgaagtctta
tttgaatacaaatttaaacgtgttgattttgtaaccgaacctggagaattttctgttcgt
ggtggtattgttgatgtcttctcattttctcatgatgaaccttatcgtatcgagtttttt
ggtgatgaagtagatagcattagaaccttcgatgtagaaacacaactctctacagaacaa
atcaaaaaaattggcatcattcctaatgttgcaaataaatttttagaagaaaacagacaa
agtttcctgaaatatatcgcacaaaaaactgtagtattttcaaaaaatactgacttactc
ttttccagaattgatgcgttcttcggaaaagcagaagacactttcaaagcgctatcatca
gaattaaaacattcagaacctgaagagctattttgtaattcagaattactgaaacgtcaa
cttatcgattttagtttggttgaatttggtccttcgacttcgttcagcaatcaagcttca
aaattaattgagtttaaaacctcccctcaaccatcatttaacaaacaattcaatttatta
attgaagaccttaacaataatcatgataagggatatacaaactacatagcttgcgtaagc
gaacaacaagcaaaacgatttcatgatatttttgaagatgttgaagaagatgtacattac
aaaacagttgtgctatccttatatcaaggattcatagatcatgatcaaaaaattacatgc
tacacagatcatcaaatctttgaacgttaccataaatttcatcttaaaaatggctacgcc
aaaaagcaagccattacacttaaagaactcaccaatttagatattggagattatgtaaca
catatcgatcatggaattggaaaatttggtggacttcaaaaaattgatgtagaaggcaaa
aaacaagaagctattaaattagtatatggtgagcgtgacgtgttgtatttaagcattcat
tcgctacataaaatcaccaagtttaatggtaaagatggtaagcctccaaaagtgtataaa
cttggaagcaaggcttggaaaacccttaagcaaaaaacaaagtctagagttaaggaaatt
gctttcaatcttattaaagtctatgcaaaacgcaaactagaaaaaggctatcaatacaaa
cctgatagttatctacagcatgagttagaagcgtcttttatttatgaagatactccagat
caaatcacatctactgcagatattaaagcagatatggaaagtgaacgtcctatggatcgc
ctcgtttgtggtgatgtaggttttggtaaaactgaagtcgctattcgtgcagcttttaaa
gccgtagacaacggaaaacaagtagcaattttagtacctacgacaattcttgcgtatcaa
cacaacaaaacaattagcgaacgactcaaagattttccagttactgttgattatctcaac
cgttttagaaccgctaaagaaaaaagagaaacaattgagaaactagaaaaaggtcatgtg
gatatcatcattggaacacatcaactagtcaataaaaaagtgaaattcaaggatttaggc
ttgctaattgttgatgaagaacaaaagtttggtgtcgcagttaaagaaaaactaaaaacg
ctaaaagataatgtggatgtcttgacattgactgctactccaattccaagaacgcttcaa
tttagtttaatggctgctcgagatttatcagtaattacaactgctccacctaatcgctat
cctattgaaagcaatgtgattcgttttagtgaagaaaccattagagatgctgtgacttat
gaaattcaacgtggtggtcaaattttctttattcataaccgaattgaaaatattaaggag
gttgctggaatgattcagcgtttagttcctgatgccaaaattggtattggtcatggacaa
atggaaggcaaaaaactagaacatttgatgttagcctttatgaatggtgagtttgatgtt
ttagtaagtactacaattgttgaaagtggtcttgatgttccaaatgccaatactattttt
attaataatgcgaataattttggattgagcgacttgcaccaaatgcgtggtcgtgttggt
agaagtaacaaaaaggccttttgttattttatcactcccgaatattcggcaatgactaat
gatgcacgaaaacgaattactgctcttgaacaatttactgagctaggaagcggtttcaat
atcgcgatgaaagatttggaaattcgtggtgcaggtgatttattaggaggagaacaaagt
ggatttatcaatgatattggttttgatacgtatcagaaaatactaaatgaagccattgaa
gaactgaaagaaaacgagtttaaagacttatatcaagacgacggaaaagagaaagattac
gttaaagatattacaattgatacggatttcgaattactatttccagataactatgtcaat
aatattactgaacgtttgaatctttacaccaaactcaacacacttaaaaccgaagcagag
ttgaaagtttttgaaaccgaaattattgatcgctttggagaactgccaattcaggtgata
gatttattaaacagtgttcgtgtaaaatggattgctacaaaaatcggattagaaaaaatc
attatgaaaaaaggccgcttagttggttattttatcaacgatcaacaaagtccgttttac
caaagtgccaactttacaaaagtcttagcgtatgttcaaacaagaccaaaagattgtaaa
atgaaagaaaaacaaactagaaatggtttgcgtttactattaacttttgaacagataaaa
tcggttaagcaagcgttaagcagacttcaagacatatga
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