Paenibacillus polymyxa Sb3-1: RE92_05895
Help
Entry
RE92_05895 CDS
T03812
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RE92_05895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_05895
Enzymes [BR:
ppoy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RE92_05895
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RE92_05895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AJE50624
LinkDB
All DBs
Position
1321253..1322155
Genome browser
AA seq
300 aa
AA seq
DB search
MGRAVKGTITIEGHEIAITNPDKPLWPEAGVTKALYLRKLAVLAPFLLKYCHQRLLTVIR
WPHGIHGDFFYQKNAPHPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHLA
GSQLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRPGI
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQIGDLIDKVPPQPVEDLLKHMRSKTHPT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagctgttaaaggtacgattacgattgaaggtcacgaaattgcgatcacaaac
ccggataaaccgctgtggcccgaagcaggtgtaactaaggcgctatatcttcgcaagctt
gcggtattggcccccttcctgctcaaatattgccatcagcgtctactgactgtcatccgt
tggccacatgggattcatggggactttttttatcagaaaaatgccccacatcctcggcca
gactacattgaaaccgctctgcatgatggcattgagtatatcgtgcttggaaagctgccc
caactactctggctcggtaatcaagctgcgttggaatttcatccctctctgcacctagca
ggaagccaactgccctgtgaatggatgattgatcttgatccatccagagaggtcgagcca
cgcattatggaggctgcctccattgtaggcgaagtattagcttcgcttgggttggactct
gtccccaaaacctccggggccacgggtgtacaaattatcgtcccgatccgtccaggcata
acctttgacgagcttcgcagcatcggactgttggttggacaatttgtaacggaaaagcac
ccgcatctattcacactggaacgattaaagaaggatcgcggaacagccatttattttgat
tatttgcagcattatcagggaaaaaccttagccgctccttatactccacgggcacgtccc
ggcgctacggtctccactccactaacctgggaagaggtacggcaggatgtgtcaccactg
gattaccatttgctgaatattgaagaacggttaaaccagataggcgacttgatcgacaag
gttcctccccagcctgtagaggacctcctcaagcatatgcgttccaaaacacacccaacc
taa
DBGET
integrated database retrieval system