Paenibacillus polymyxa Sb3-1: RE92_10045
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Entry
RE92_10045 CDS
T03812
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RE92_10045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppoy03400
]
RE92_10045
Enzymes [BR:
ppoy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RE92_10045
DNA repair and recombination proteins [BR:
ppoy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RE92_10045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
TMEM101
Motif
Other DBs
NCBI-ProteinID:
AJE54046
LinkDB
All DBs
Position
2272199..2273149
Genome browser
AA seq
316 aa
AA seq
DB search
MKPVIPFEPELSEKVPVDAGLWRYEIKWDGTRILTYHDQGSTRLFNRKQHERTLLYPELA
RFSSYCRADSVILDGEMIALGADGKPSFHEIMRRDLIRRTDRIQAAYKAVPATYMLFDIV
YLNGEWVHRKPLQERLELLHQIIIPNERIQLAPAHPDGQALFQVMCSQGMEGIVCKKLDS
PYTLGGQDRRWVKVKNYGDIIAVIGGYTLNGGVINAVLLGQYDRQGMLRYIGHVGTGKLT
RGDWRQLTERLLPHTISERPFINKPDRHQDAFWVKPMFTAKIQYSEWRWQEGRTLRQPSI
QALVDQGIEQCIGPWK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgtcatcccgtttgaaccagaactgagcgaaaaggtccctgtagatgcaggc
ctttggcgttacgaaataaaatgggacggtacaagaattttaacgtatcacgatcagggc
agcacgcgtctgttcaatcgcaagcagcatgaacgaacgctattgtacccggagcttgct
cgcttctcctcctactgcagggcagattcagtcatactggacggggagatgatcgcactt
ggtgccgacggtaaaccgtcgttccatgaaattatgcgccgggatctgattcgccggacg
gatcgaattcaggcagcctataaagccgtacccgctacttacatgttgttcgatattgtt
tatctaaatggggaatgggttcatcgcaaaccgttacaggaaaggcttgaactgctgcat
cagatcatcataccgaatgaacggatccaactggctcccgctcatcctgatggacaagct
ctatttcaggttatgtgcagccaaggaatggaaggtattgtgtgcaaaaaactggatagt
ccatacacattgggcggacaggacagacgatgggtcaaggtcaaaaattatggtgatatc
attgccgttatcggtggctataccctaaacggaggcgttatcaacgctgtattgctgggc
cagtatgatagacaaggaatgctgcgctatatcgggcacgtggggacaggtaagctgact
cgtggagattggcgtcagctaaccgagcgcctcttgccacataccatatcggagcgacct
tttattaataaaccggatcggcatcaagacgcattttgggtaaagcccatgtttaccgcc
aagattcaatatagtgaatggcgatggcaagaaggacgtaccttgcgtcagccctccatc
caagctcttgtggatcaaggtattgaacagtgcatcggaccttggaagtga
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integrated database retrieval system
