Paenibacillus polymyxa Sb3-1: RE92_10725
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Entry
RE92_10725 CDS
T03812
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE92_10725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppoy03019
]
RE92_10725
03016 Transfer RNA biogenesis [BR:
ppoy03016
]
RE92_10725
Enzymes [BR:
ppoy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RE92_10725
Messenger RNA biogenesis [BR:
ppoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RE92_10725
Transfer RNA biogenesis [BR:
ppoy03016
]
Prokaryotic type
tRNA degradation factors
RE92_10725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
TFA2_Winged_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AJE51480
LinkDB
All DBs
Position
complement(2443390..2445999)
Genome browser
AA seq
869 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFDIKDAEEFREFLKLLNALEEDGKILLTRTNRY
GVPERMDLQRGRLQAHAKGFAFLIPEDREHPDVYIHANDLKSAMNGDTVLVRVTSKGPAG
GRLEGEVVRIVKRAVLQVVGVFQSHEAYGFVLPDDKRINRDIFIPKDSFNGAVNGQKVVV
RIVSYPEGRAAAEGEVLEVLGHKDDPGVDILSVIRKHQLPEAFPDEVMAEADEAPDAITE
EEIIRQGRRDLRDKIIVTIDGEDAKDLDDAVNVERLPNGNYRLGVHIADVGYYVRENSKL
DLEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFNEHMKVVKHDIFT
SVIKTKERMTYTNVRKILEEEDAELMERYKDLVDVFRTMKDLALKLRANRMRRGAVDFDF
DEAKVIVDDEGKAVDIVKRDRTIAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGHQIKGRGNSIHPRALQTLLEDIQGTKEQTVLSTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVIREVLENGGALTDERQEYLTARMPDIAQQ
SSERERVAVDAERDTEQMKKAEYMLDKVGEEFEGIISSVTSFGMFIELDNTVEGLTRLSA
LTDDYYHFDEQHMALIGERTSKVFRIGDEVKVRVARVNMEDYTIDFELVDMKQRQRRERT
GGSGQGGDFARGEGRAKGRGREGRDRKGGKDKAGRERKGGREAAGKPKEGGNGGISTTGR
AGRGGGNGVGTGSPGSFGFGSGKGGYNSPATGASKRRKKTSASGIFIGDAATPGSDASPG
GEGAARRKRKKKGGNGGNSTAGFVRKKKK
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgataacagagcaacaactacttgatttcatgcgcgagaccgcatacaagcctatgaca
taccaggagctggagcaacattttgacattaaggatgcagaagagtttcgtgaatttctt
aagctcttgaacgcattggaggaagacgggaaaattctgctgacccgtacgaaccgttat
ggtgttccagaacggatggatttgcagcgcgggcgtttgcaggcccatgccaagggcttt
gcttttttgattccagaggaccgggagcacccggatgtatacattcatgctaacgactta
aagagcgcgatgaatggagatacggtactggtaagagtaacatcaaagggacctgcgggt
ggccgactagaaggcgaagttgtgcgaatcgtgaagcgcgcagtgcttcaggtagtcggt
gtgtttcagagccacgaagcatacggttttgttttgccggatgataaacgtattaaccgg
gacattttcattcctaaggacagctttaacggagctgtaaacggacaaaaggtcgtcgtg
cgtattgtgagctatccggaaggacgtgcagcggcagaaggcgaagtgctggaggtgctg
ggtcataaggatgatccgggcgttgacatcttgtccgttattcgcaagcatcagctccca
gaagcttttccggatgaagtgatggcggaagcggatgaggctcctgatgcgattacggaa
gaggagattatacgtcagggacggcgtgatttgcgcgataagatcattgtcaccattgac
ggggaggatgccaaagacctcgatgatgcggttaatgtagagcgtttgccgaacggaaac
tatcgtctgggcgttcatattgctgacgtagggtattatgtgcgtgagaactcaaagctg
gatctggaggcatataaccgcggttgtagtgtgtatttggttgaccgcgtcattccgatg
cttccacatcgactttcaaacggaatttgttcattgaatcctcaggtggatcgactgact
ttatcctgtgagatggaattcaatgagcatatgaaggtcgtaaagcatgatattttcacc
agcgtgattaaaacgaaggaacggatgacctatactaacgttcgcaaaatcctcgaagag
gaagatgcagaactgatggaacggtacaaggacctggttgatgtattccgtacgatgaag
gatttagcattgaagctgcgtgcgaatcggatgcgccgcggtgcagttgattttgatttt
gatgaggccaaagtgattgtagatgatgaaggcaaagctgtcgatattgtgaagagggat
cgtacgatagccgaacaaattattgaagagtttatgctggcggccaatgaaacggtagcc
gaacattttcactggctcaaggtaccgttcttgtaccggattcatgaggaccccgaccca
gagaagctgcaaaactttatggcttttgcagctaattttggtcatcagatcaaaggccga
ggaaattccattcatccgcgagcactgcaaacattgttagaagacattcagggtacgaag
gagcaaacggtgcttagcacaatgatgctgcgttcgatgaagcaggcaaaatatgatgcg
gagtctacaggacattttggactggctgcggagtattactctcattttacatcaccgatt
cgtcgttaccctgacttggtaattcaccgtgtcattcgtgaggtattggagaatggcggg
gctttaacagacgagcgtcaggaatatttgactgcacgcatgccagatattgctcagcaa
tcctccgagcgtgaacgtgtggctgtggatgcagagcgcgacacagagcaaatgaaaaag
gctgaatacatgctggacaaggttggcgaggagttcgaagggatcatcagcagtgtaacc
agctttgggatgttcattgagctggacaacacagtcgagggcttaacgcgtctgagtgca
cttacggacgactattatcattttgacgagcagcatatggcgttaatcggagaacgcacc
tctaaggtattccgcattggggatgaggttaaggttcgcgtcgcgcgtgtgaatatggaa
gattacacaattgactttgaactcgtcgatatgaagcaacggcaacgtcgcgaacggacg
ggaggctcgggccagggtggagattttgcacgtggcgagggccgtgctaaaggcagaggc
cgagaaggacgtgatcgtaagggcggtaaggacaaggctggtagagagcgtaaaggcggt
cgtgaggcggctggaaagcctaaagagggcggcaacggaggaatcagcaccacaggtcgc
gcaggtcgcggtggtggaaacggtgtcggtacaggctcgccaggcagcttcggctttggt
agtggcaagggcggatacaattcgccagcaacgggtgcaagcaagcgacggaagaagacg
tctgccagcgggatattcattggtgatgcagctaccccaggtagtgatgccagcccaggt
ggcgaaggcgcagcacgtcgcaaacggaaaaaaaagggcggtaacggtgggaatagcacc
gctgggtttgtacggaaaaagaaaaagtag
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