Physcomitrium patens (spreading earthmoss): 112276815
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Entry
112276815 CDS
T01041
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112276815
09124 Replication and repair
03420 Nucleotide excision repair
112276815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112276815
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112276815
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112276815
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112276815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
VWA
ParD
Motif
Other DBs
NCBI-GeneID:
112276815
NCBI-ProteinID:
XP_024364304
LinkDB
All DBs
Position
24:4375515..4377928
Genome browser
AA seq
419 aa
AA seq
DB search
MMDMDEREVPLQLDFEDDGVEEDEPMADRGAFERQYADERSWEELQEDESGMLRVDVAQQ
QRQHRKRMSAMAGPRIQRGIIRYLFVLLDFSRAAAEMDLRPSRMGIVVDCVEAFVREFFD
QNPLSHLGVILLKDGIAHQLTDLSGSPETHIRALRSNMESTGDASIQNGLDLARGYLTQI
PSYGHREVLLVYSALSTIDPGDVMETVQECKKANIRCSVVGLSAEIYICKLLCEQTGGMY
SVATNEGHLKELIMEHAPPPAAQAEMSVASLVRMGFPQRGAEDAVALCACHREVKMGGGY
TCPRCKARVCELPTQCHICGLTLVSSPHLARSYHHLFPVSPFEEVENLASANGRQSLSKS
CYGCLQELPTPGGKVKGVRLECPRCRQHFCFDCDNYIHESLHNCPGCESNSVILSQLSQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgatggacatggatgagcgggaggtgccgttgcagttggacttcgaggacgatggcgtg
gaggaggacgaacccatggccgaccggggtgccttcgagcgccaatacgcggacgagcgc
tcctgggaagagctccaggaagatgagtcgggaatgttgcgcgttgatgtggcgcagcaa
cagcgccagcaccgtaagcgtatgtccgccatggcggggcctcgtattcagcgcggcatc
atccggtacctcttcgtgctgctggatttctcgcgagcagctgcggagatggatcttcgt
ccaagtcgcatgggcattgtggttgattgcgtggaggcttttgtccgggaatttttcgac
cagaacccattgagccacctaggggttatactgctcaaggatgggattgcgcaccaactg
acagatttgagcggtagccccgagactcacattcgggctcttcgaagtaacatggagtct
acaggagatgcttcaatccaaaacggtttagatctggcacggggttatttgactcaaata
ccaagttacgggcatcgagaagtattgctcgtctattcagccttgagtacgattgaccct
ggagacgtaatggaaacagtgcaagaatgtaaaaaggccaatattcgttgctctgtcgtt
ggtctatcagcagagatttacatatgtaaacttctatgtgaacaaactggaggcatgtat
tctgtggccacgaacgagggtcatttgaaggaacttattatggagcatgctcctccacca
gcagcgcaagctgagatgtccgtggcaagcttagtacgtatgggatttcctcagaggggg
gccgaagatgcagtggccctctgcgcttgtcatagagaagtgaagatgggaggaggctac
acttgcccacgctgcaaggccagagtctgtgagcttccaacccaatgtcacatctgtggt
ttaactttggtttcgtcgccacaccttgcgagatcgtatcatcatctctttcctgtgtct
cctttcgaagaggttgagaacttagcgtctgcaaatggacgccaaagtctgtccaagagt
tgctatgggtgcttgcaggagcttcccaccccaggtgggaaggtgaaaggagtccgcctt
gaatgcccgcggtgtagacagcatttctgctttgattgtgataattacattcacgagagt
cttcataattgccctggttgtgaaagcaattcagtcatactatcacaactttcccaataa
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