Physcomitrium patens (spreading earthmoss): 112279971
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Entry
112279971 CDS
T01041
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03022
Basal transcription factors
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112279971
09124 Replication and repair
03420 Nucleotide excision repair
112279971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112279971
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112279971
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112279971
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112279971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
112279971
NCBI-ProteinID:
XP_024370572
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All DBs
Position
3:complement(3565714..3571792)
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AA seq
462 aa
AA seq
DB search
MPRVRVVSRNFMEMVAALPAAKLDLLYDRHWTCQAVFRSLPPLAKQYVLRLLWVENAVPL
KSWQEWARPEALSKHQIAIDRLEQLRVILPERKKEVCYRMNPKLQKQLRQALSTGGGPPR
DVVSESVAARVPNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGLLTP
SSRENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLVG
EAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQSSEG
FVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAEQII
SFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHA
RDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQSSGAPAQRK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgagtgcgggtagtttcgagaaacttcatggagatggtggctgcattaccagca
gcgaagctggatttgctctatgatcgtcattggacttgccaagcagtttttcgttcatta
cctcctttggcgaagcagtacgtgctgcgtctattatgggttgaaaatgccgttcccctg
aaatcttggcaagaatgggctcgaccggaggccctttccaagcatcaaatagcaatagac
cggttagagcaattacgagtcatcttgcctgaaaggaagaaagaagtgtgttataggatg
aatccaaaactacagaaacaactccggcaagcattaagcacagggggcgggcctccaagg
gacgtcgtgtctgaaagtgttgctgctagagttccgaattctgcggatctcgaaaactat
gccatgaaacagtgggagtcggtgcttttgcaacttgtagattgtgcggcagatggtcct
gcgggtcctaaaaatccttttatcattaaagtcttccagcgatcagggcttttaaccccg
tctagcagagagaacgagtcgccttcactcaccgacctgggcttccaattcctgctgatg
gacaccaattcgcaactgtggcagcttgtgcgggagtatgttacgtcatctgaggaccga
gggacagatagcggcgagcttgtaggcttcttattagagcttggttttcatcttgtggga
gaagcgtattctgtcaactctttgtctcctgctcttcagaaggttttggatgagcttgct
gccttggggcttgtgaagttacaacagggtatgaaggagagctggtatattcctaccaag
cttgcgtcgaacctttctgcaagtctttcggaatcaactgattggcagtcttccgagggt
tttgttgtggtggagacaaattttaaagtttatgcatacacatcctcgaagctgcaaact
gaaattttacgctgttttacacggctagagtaccagttgccgaatctggttgtagccact
ctcaccaaggagagtgtcaataaagctcttggaagtggaatatcagcggaacagataatc
tcatttcttcgcaagcatgcacatcctcatgttgctcagaagattcctgttgtcccagaa
actgtttcagatcaactgcgtttgtgggaaacggatcgaaatagagttcaatttgagcct
gcttatttttacgatgacttccccacaatggctatttacgaggctgttgtagctcatgcg
cgagatcttggtggactcctctttgaagatgcttctgccaagaggctaattgtgcgatca
gacctgcacgaagatatgcggcaatacatacggaagcaaagcagcggagcacctgcacag
cggaaatga
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