Physcomitrium patens (spreading earthmoss): 112291880
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Entry
112291880 CDS
T01041
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112291880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112291880
Enzymes [BR:
ppp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112291880
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112291880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
112291880
NCBI-ProteinID:
XP_024395597
LinkDB
All DBs
Position
14:4072255..4083213
Genome browser
AA seq
1297 aa
AA seq
DB search
MKRMEETVEFGVLCSMFEAIVRCKKGALKRKHVRTFLEHVYNGQEHFSAMRLILPDLDKE
RANYGLREAVLAKFLADALGLSKESEDAKKLINWRKGGQRAGSNAGNFSMVASEVLCRRQ
KTAPGGLMIKEVNDLLDRLAAAQDKEEKTAVLAELINKTNAQEMRWIIMIILKDLKLGIS
EKTVFSEFHPDAEDYFNVTCDLKLVCEKLRDRSIRYKRQDIEVGKAVRPQLAARAANVED
AWKKMRGKDVVVECKFDGDRIQVHKNGNNLNFWSRTFNDHPEFKEAIGDVLCQRIIPEKC
ILDGEMLVWDRVSQRFAEFGSNRGVAKAAKDGLDSDLQICYVAFDILYDGDSSVIHRPLR
ERQRLLQNAIRPLSGRLEVLIPAAGGLNAKHAVGDPRWSILATSPEEVEQFFQETIDNRE
EGVVLKDLDSKWEPSDRSGKWLKLKPDYVHSESDLDALIIGGYFGTGRRGGEVAQFLLGL
AEPSEVGGYPTKFRSFCRVGTGLTDDEAEQLVHKLKPHFRRNHKSTKPPSCYVLTNSSKE
RPDVWIERPEKSVILQITSDIRTIRSEVFATPYSLRFPRIQRIRYDKPWYDCLDVQTLVD
TVHAKSQNDGQAEGGNQFKYRARRAKQEKPERASLVPSHMLVTDVSHVKQATRIFKGLVF
YVANTSSEYPVEKIHKLVVENGGTFSMNLSSTVTHAVAFEKKGLKYQASFMNGDVIHLSW
LLDCMAQKVLLVVSPKYYLNMSDATKERLKGEVDEFGDFYCNEVDETDLTQIFENIDVNK
QYHDIDRVNYYIKKYSPSPTWCLFSGCCVFFLRPLHSANENTLQVANLTLRRLALEVEMH
EGTVSDKLTRSITHVVMYVPTESPVSFQIILRSASSEERRLLLSKRVKVVSHRWIEDSVN
RSIYRHPADEEYDLSRTGEVLLSDEEEEELVSKTSVPIKADSMVPITPDKRVVPRSLRKP
ATRRRALNLGRPSRRSKGTEEELPRVEAQKSGKEEHVEDDRAPTEITNKGTRNDPKAVEP
FQLDDSASRTPEKRVLRVTRSRKKDKPSSGNERLPLKRRLIHDEGEASLTQPSDKALTGA
EPFIPRMSTRLAEKRKAFESKREADTYKLECTAADLREEDQEEPVEASEFEGLQNTSSLK
EPTGRDDSRLHFNDFDHQSPAIDDMINTLLPNYASSQQANLSQQTNRESALPSRSNSFFI
KPTLAPQPTQGVLGSYSRPYLPSHCASEALQPVPDAPDNSDLFSSVHRLASSQDHLTGTV
TVESSSQGLATYLPPTNNPEKKKRSFKDLVNQMLNGN
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggatggaggaaactgtggagttcggagtattgtgtagcatgtttgaggccatc
gttaggtgtaagaagggagctctgaagcggaaacatgtgcggacgtttttggagcatgtt
tacaatggccaagagcattttagcgctatgcgtttgattcttcccgacttggataaagag
cgtgccaactatggactccgcgaggctgtgttggccaaattcttagccgatgctctgggg
ctgtctaaagaatctgaggacgctaagaaacttatcaattggcgtaaaggaggccaaaga
gccggcagcaatgccggcaatttctctatggttgcgtctgaggtgctctgcaggaggcag
aaaacagcacctggtggtctaatgattaaagaggtcaatgatcttctcgatcgcttagcg
gcagcacaagacaaggaagagaaaacagctgtgctagctgagctcatcaacaagacaaat
gctcaggaaatgaggtggattattatgattattctgaaagatttgaaactcgggattagt
gagaagacagttttcagcgagtttcatcccgacgcggaagattatttcaatgtcacatgc
gatctgaagttggtttgtgaaaagcttcgtgatcgcagcatacgttacaagcgccaggat
atcgaagtggggaaggcagtgcgaccacaattagccgcaagggctgccaatgtcgaagat
gcctggaagaagatgcgaggcaaagacgttgtggtagaatgcaagtttgatggagaccgt
attcaagtgcacaaaaatggaaataatctgaacttctggtcaaggacgtttaatgaccat
ccagagttcaaggaggctattggtgacgtattgtgtcaacgtatcattcccgagaagtgt
atacttgacggagagatgttggtttgggatcgagtgtcgcaaagatttgctgagtttggc
tctaatcgtggagttgcaaaggctgctaaggatggcttggattctgatcttcagatttgt
tatgttgcattcgatattctgtatgatggtgacagcagtgttatccatcgtccgttgcgt
gaacggcaacggctccttcagaacgctattcgtcctctcagtggccgtctggaggttctt
atacctgcagccggagggcttaatgcaaagcatgctgttggagatccgaggtggtcaatc
ttggccacaagtcccgaggaggtggaacagttttttcaagagacgatcgacaatagggag
gaaggggttgtgttaaaagacctagattccaaatgggagcccagtgatcgtagtggaaaa
tggcttaaactcaagcctgattacgttcactctgaatctgaccttgatgcgctgataata
ggtggttattttggaactggacggcgtggtggtgaggttgctcaatttttattgggattg
gctgagccgtcagaagtgggtggctaccctacaaaatttcgttccttctgcagagtgggt
acaggcctcactgatgatgaggctgagcagttagtgcacaagctcaaaccccacttcagg
aggaatcataaaagcaccaaaccaccgagctgttatgtgctgactaactcatccaaagag
cggcctgatgtctggattgaacgacctgaaaagtccgtaatacttcaaatcacaagtgat
atccgaaccatacgctctgaggtatttgcaacgccgtatagtctacggtttcctcgaatc
caaagaattcgatatgataaaccttggtatgactgcctcgatgttcagacattagtagat
acggtacatgcaaagagccagaacgatggtcaagcggaaggtgggaatcaattcaaatat
cgagcaagacgggccaaacaggaaaagcctgaacgagcatcattggtcccctcccacatg
ttggtaacagacgtatcgcatgtaaagcaagccactcgcatcttcaagggccttgtcttc
tacgttgccaacacttccagtgagtacccagttgagaaaattcacaaattggttgtagag
aatggaggcaccttctctatgaacttgagcagtactgttactcacgcggtcgcattcgaa
aagaaaggactcaagtatcaggcatcttttatgaatggggatgtcattcatctatcatgg
cttttagactgcatggctcagaaagtactccttgtagtaagccccaagtattacttgaat
atgtcagatgccacaaaggaaagactgaaaggtgaagttgacgaatttggagatttttac
tgcaacgaagttgatgaaactgaccttacacagatcttcgaaaacatagatgtgaacaag
cagtaccacgacattgacagagtgaattactacatcaagaaatattccccatctccaact
tggtgccttttctccggctgctgcgtcttctttctccgtcctcttcactccgcgaatgaa
aatactctacaggtggcaaacctaacattgagaagacttgcactcgaggtggagatgcac
gaaggcaccgtttctgacaaattgacgcgtagcatcacacacgttgtgatgtatgtacct
acggaaagtcccgtatcgttccagattatattacgaagtgcgtcatcggaggaaagaagg
ctgctattatcgaagcgggtcaaagttgtaagccatcgctggatagaggattctgttaac
agaagtatctaccgtcaccccgcagacgaagagtatgatctcagcaggactggagaagtg
cttttgtccgatgaggaagaagaagagctggtgtcaaaaacttcagtccccataaaggct
gactcgatggtacccatcaccccagacaagagggttgtacctagatctcttcgaaaacca
gctacgcggagacgagccctgaaccttggaaggcctagtagaagatccaaaggaacagag
gaggaacttccaagagtagaggcccaaaagtcgggcaaagaagagcacgtagaggatgac
agagcaccaacagaaataaccaataagggaaccaggaatgatccgaaggcagtggaacct
tttcaattagatgattctgcttctcgtacaccagaaaagagagttcttagagttactcga
agcaggaaaaaagacaaaccatcatctgggaatgagcgcctacctttaaaacgacgtctc
attcatgatgaaggtgaggcatctctgacccaaccttcagacaaggcactcacaggagcg
gaacctttcataccaagaatgtcgaccagattggctgagaaaagaaaagcattcgaaagc
aagagagaagccgacacatataagctagaatgtactgcagcggatcttcgtgaggaagac
caagaagagcccgtggaagcttcagaattcgaggggttgcagaacaccagttctttgaaa
gagccaactggaagggacgacagcagattacatttcaacgatttcgaccatcaaagccca
gccattgatgatatgatcaatactctacttccaaattacgcctcatcacaacaggctaac
ttatctcaacaaacgaacagagagagtgccttgccctcaaggtcgaactcattttttatc
aaaccgacgttggccccacaacccactcagggagttctaggtagctactctcgaccatat
ctcccttcacattgtgcatctgaagccctccagccggtaccagatgctccagataactct
gatttattttcatcagtgcatcgtttggcaagttcacaagaccacttgactgggactgtg
acggttgaatcatcctcacaggggttggcaacttatctacctccgaccaacaaccctgag
aagaagaaaagaagctttaaggatctggtcaaccagatgctcaacggtaactga
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