Physcomitrium patens (spreading earthmoss): 112293458
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Entry
112293458 CDS
T01041
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112293458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112293458
03019 Messenger RNA biogenesis [BR:
ppp03019
]
112293458
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112293458
Messenger RNA biogenesis [BR:
ppp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112293458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112293458
NCBI-ProteinID:
XP_024398665
LinkDB
All DBs
Position
16:4134647..4141876
Genome browser
AA seq
1296 aa
AA seq
DB search
MPRDRHNGDVIGSGPPGNIRMARGSVPERERELMKFGNYPARQLIVERDMLDGDPRRVGH
LTMTGREMETDDGPVDRGPGGNREEIASAAEELLELVTQYKSALVELTFNSKPIITNLTI
IAGENAHAAHGITKTICDHIITVPKDQKLPSLYLLDSIVKNIGGEYVKYFAARLPEVFCK
AYRQVDPSLYTAMQHLFWTWRGVFPQAPLRTIETELQLGPKPGAPASITQPPRAVDPAVR
PGHGIHVNPKYLEQRQLIQQTRPSRVDSMSPAETNGDAKLRQDKSTLRENPKTWPETQRA
IIGHFNRERLAEPGYNKELTLDYSDYELGRRGVPRPEIGKLRKLERLDQGESGSWLREGD
AEKGNGVPDERSQRHPRRNGCRDDPRQSLGARPVGVDGQDYSRTSGPGRGGAFLASQSVD
LGSRGRGEVRSRRMDPRIPVGADGRGRRIGLGSEVEEGRGYRIDSRTRSLEAGGRGNRLD
TRGMGLESRGLVPDGSGLRPNVRGSVLDNRALRSETVGLGADSRGLRLDRGLGSEVVGRG
NWQNEEEEEFQWEDMHPQVQEPDRKAGDSKADEWLSVDRDMIRAGNSNRPGIEPVGGLDD
WRRVGSGSQSEQFSGPAAIRGTLRRESEERSRLAMSQSSHGSRLKVEPDMDVMNSGQTRL
PPVQVTLPNFSMALSTSNVQPRPGTPPILSPGGRDSVQGGRGAYGLRQNYGSNLGQGPGY
NSSSGVPFGQGQNDGQANGVHSSQAVPCSVGLPQVSAGGMLQLPLFGPSQQAGNSSVQVA
VISQQSGLVSSEGTQNQYPQQSGSGVVTMQAQLNQFQQATQGGSSLGGNQGGVLPLNTAA
ISELLKLVQQLPASQNPMQQQQQALPSSQTQSQIVTTGQVLQSVSGAPPLPNGSPPSFLY
NSVAQQGGQYTTAQGQVLAPPMLYPSQAGGVPNQPPLPPGPPPASALTGNSGGQGSGGAG
VNQFDNLFKSLLAQGLISAPGATAATSVQAAVVDVRGGMNAASTSSSFFNPNVGSVQASS
VQAFALSSGLGGSVGPGADSSSRYAGDAAAGSQGVAVKDDPIGTEFKPEVLRERHEVVID
ALYNDFPRQCKTCGLRFLEQEAHSKHMDWHVSRNRRQKSQKKVSRKWFVSEKEWLSGTVA
SSAEAAPSFFAAEVGAGAAKADEGESLAVPADYNQSVCALCGEPFDDFYSDERDEWMYKG
AVYMNVPAGGSIEGIDSVNLGPIVHAKCQTESAATADLTEDSEEVQPELMAADSVRMEVD
VGGGDDTAMPLLDNFEALESKDENIEMENRKKRVRY
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgcccagggacagacataatggcgatgtcattggaagtggacctccgggcaatataagg
atggcccgaggttctgttccagagcgtgaaagagagctgatgaagtttgggaactatcct
gccagacagttgattgttgagagggatatgttggacggcgaccctaggagagtaggtcac
ctcacaatgacaggcagagaaatggagacggatgatggtccggttgatagaggcccaggt
ggaaatcgagaagagattgcctcagcggctgaagagctactggaacttgtcacgcagtat
aagtctgcactagtggagttgacatttaactccaaacccatcatcactaatttgactatc
atagccggggagaatgcgcacgccgcccacggcataacgaaaacgatctgcgaccacatt
attacggttccaaaggaccagaagcttccatctttatacctccttgatagtattgtgaag
aatattggaggcgagtatgtaaaatactttgctgcacgacttcctgaggttttttgtaaa
gcatacagacaagtagatccaagtctttacacagcaatgcaacatctattttggacctgg
cggggtgtttttccacaagctcctcttagaacaatcgagacagaactgcagttgggcccg
aagcctggtgctcctgctagtattactcagcccccaagagccgtggaccctgctgtgcgt
cctggacatggtatacatgtgaatccgaagtacttggagcaacgccaacttatacagcag
acaagaccaagcagggttgatagtatgtctcctgcggaaaccaacggcgatgctaaattg
aggcaagacaaatctacgctacgggaaaatccaaagacatggccggaaacacaaagagca
attattgggcatttcaatcgagagcgtcttgctgaaccaggttacaacaaagagcttaca
ttggattactcagattatgagcttgggagacggggagttccaagacccgaaattggtaaa
ttaagaaaactagagagacttgatcaaggagagagcggttcgtggttacgtgagggagat
gccgaaaaagggaatggagttcctgatgagcggtcacaacgtcatcctcgtcgaaacggc
tgtcgggatgatccaaggcagtcgttgggagcaaggcctgtaggtgtggatgggcaggac
tacagtcgcacctctggtccagggagaggaggtgcttttcttgcgtcacagtctgtggat
cttggtagcagaggtagaggcgaagtgcggagtcgtaggatggatcctcgaattcccgtt
ggtgcggatggaaggggtcgtagaatagggctggggtctgaagtagaagaagggcgggga
tacagaatcgacagccgaacccgcagtttggaggctggtggccgaggcaataggttggat
actcgtggcatgggtctggagagtcgggggttagtcccagacggttctggactacggcct
aatgttcggggttcagtgcttgacaaccgtgctttacgatctgaaaccgttgggctagga
gcagatagtcgaggcttgaggttagatcggggcctgggtagcgaggtcgtagggagggga
aactggcaaaatgaagaagaagaggaatttcaatgggaagatatgcatccacaggtacag
gaaccagatcgaaaggccggcgacagtaaagcggatgaatggttaagtgtagacagggac
atgataagggcaggaaattcgaacaggccagggattgaacccgtgggaggtttggacgac
tggcggagagttggaagcggttctcaatccgaacagttctctggtccagcagcaattcgg
ggaactctccgcagagagtctgaggagcgcagtcgactcgcgatgtcccagtctagtcat
gggtctcgtttgaaggtggagccggacatggatgtgatgaattctggtcagacaagatta
cctccagtgcaggtgacgcttccgaatttcagcatggcactaagtacgtcaaacgtgcaa
ccacgaccagggactcctccaatcctttccccaggtggaagagacagcgttcaaggtgga
cgaggagcatatgggttgaggcaaaactacgggtcgaatctagggcagggtccgggttat
aacagctcgtctggtgttccgtttggtcaaggccagaatgatgggcaggcgaacggagta
cattcctcgcaggcagttccatgttcagtaggtttaccgcaagtgtctgcaggtggaatg
ttgcaattgcctctgtttggtccgagtcagcaggcaggtaattcgagcgtgcaggttgcg
gtgatatctcagcagagcggtcttgtgagttcagagggcacgcagaaccagtacccgcaa
caaagcgggagtggagtggtgacaatgcaagcgcagttgaatcagttccagcaggcaaca
caaggagggtcaagtttgggtggtaatcagggtggtgttctccccctgaacaccgcagcg
atttctgagctgctgaaactagtacagcagttgccagcttcgcagaacccgatgcagcaa
cagcagcaagcgcttccttcatcgcaaacccagtcgcagattgtaacgacgggtcaggtg
ttgcagtcggtttcaggcgcacctcctctaccgaacggttcgccgcctagttttttgtac
aactcggtagcacaacagggagggcagtacacgacagcacagggtcaggtgctggcgcct
ccaatgctgtaccccagccaggcgggaggtgttccgaaccagcctcctcttcctcctggt
ccgccaccagcgtcagctctgacgggcaattccgggggtcaggggtctgggggagcggga
gtgaaccagttcgacaacctgttcaagtcgctgctagctcaaggcctgatatctgctccc
ggtgcgacggctgcgacgagtgtccaagctgcggtggtggatgtgcgaggagggatgaac
gcggcgagcacgagttcgtcgttcttcaacccaaatgtaggcagcgtgcaggcgagcagt
gtgcaggcgtttgcgctttcgagtggtttggggggcagcgtgggtcccggcgcggacagc
tcatctcggtacgcgggtgatgcagcagcagggagccagggtgtggcagtgaaggatgat
ccaatcgggacggagttcaagccggaagtgttgagggagaggcacgaggtggtaatagac
gcgctgtacaatgattttcctcggcaatgcaagacgtgcgggcttcgatttttggagcaa
gaggctcacagcaagcacatggattggcatgtatcgaggaacaggcggcagaagtcgcag
aagaaggtgtcacggaagtggttcgtaagcgagaaggagtggctgagcgggacggtggca
tcgagtgcggaagcggcgcctagttttttcgctgcagaggtgggtgcaggtgcagcgaaa
gcggacgagggcgagagtctggcggttccagcagattacaaccagagcgtgtgcgcgttg
tgtggagagccattcgatgatttttacagcgacgagagggatgagtggatgtacaagggt
gcggtgtatatgaacgttcctgcgggcggttctatagaggggatcgacagtgtaaatttg
gggcccattgttcacgcgaagtgccagacggagtctgcagcgacggcagatctaacggag
gacagcgaggaggttcaaccggagttgatggcagcagatagtgttcgcatggaggttgat
gtgggagggggagatgatacagccatgccgttactagacaattttgaagctttggaaagc
aaggacgagaacattgaaatggagaacaggaagaagagagtccggtattga
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