Paenibacillus polymyxa SQR-21: PPSQR21_007440
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Entry
PPSQR21_007440 CDS
T03178
Name
(GenBank) beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPSQR21_007440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppq03019
]
PPSQR21_007440
Messenger RNA biogenesis [BR:
ppq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PPSQR21_007440
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
ODP
WT1
Motif
Other DBs
NCBI-ProteinID:
AHM64407
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Position
817037..818707
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AA seq
556 aa
AA seq
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MLADNGLLIAALGGVNEIGKNMYLIQYDQDIVVIDCGSKFPNENLPGIDLIVPDVTYLQE
NQDKVRALIVTHGHEDHIGGIPYLLKQINIPVYGTKLTIELIKIKLKEHNLLRDAELHLI
DADSTIQAGSIQACFFTTVHSIPDCLGVFFKTPEGNVVHTGDFKFDMSPVSGPFPDLHRM
AEIGKQGVKVLLSESTNAERPGFTPSERLVGGHILDAFARAKQQVFISTFASNVNRVQQV
IDAAVETGRKLVLLGRSMINVVSVAKELGFLHMPEDLLIEAGETERYPAEEIAVLCTGSQ
GEPMAALSRLANSLHPKIEILPGDTVIIAAGAIPGNERNLSQVIDNLYVLGANVIYGSGS
ATGMHVSGHGSQEELKLMMTLMKPQYLIPIHGEFRMLHQHRQLAESVGIPMENVFIVQNG
ETIQIAEGRASLGPKVPSGNSLVDGLVTGDVGNIVLRDRKKLSSDGMLIIVMTLSKNEKQ
MLAAPEVISRGFVYVKDSEELMNQIRDTIMTTVNELTEIEMSQWGLIKQMLKDNVGQFIY
SQTKRRPMILPIIIEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgataacggattactcattgctgctttaggcggtgttaatgagattggtaaa
aatatgtaccttatccaatatgatcaggatattgtcgtcattgattgtggttccaagttt
cctaatgaaaatttgcctggtattgacctcattgtaccagatgtcacctatctacaggag
aatcaggataaagtcagagcgctcattgtaacgcatggccatgaggatcacatcgggggc
attccttatttactgaagcagattaatatccccgtatatggcacaaaactcactatcgaa
ttgattaaaattaagctaaaggaacataaccttttacgtgatgctgagcttcatcttata
gatgcggattcaacgattcaggcgggttcgattcaggcatgctttttcaccactgtacac
agcatccctgattgcttgggcgtctttttcaagacaccagaaggaaatgtggttcatacc
ggggattttaaattcgacatgtctcctgtcagcggacctttccctgaccttcatcgcatg
gctgagattggaaaacaaggagttaaagtgcttctttccgaaagtacaaatgccgaaaga
ccaggctttactccttcggagcgtttggttggcgggcatattttggacgctttcgccaga
gccaaacagcaagttttcatttctacatttgcttccaatgttaaccgtgtccaacaggtc
attgatgcggctgtggagacaggcagaaaacttgttttactggggcgcagtatgatcaat
gtggtgtccgtggctaaggagttgggattcttgcacatgccggaggacttgttaattgag
gctggagaaacggagcggtatcctgcagaagaaattgcagtattatgtacaggaagtcag
ggggaaccgatggctgcactgtcccgacttgccaattctctgcatcccaaaatcgaaatt
ttgcctggtgatactgtgatcatcgctgcaggagctatacccgggaatgaacgaaatctt
tcccaagtcatcgataacctgtacgtactgggcgccaacgtgatttatggatcgggcagc
gccacggggatgcacgtatccggtcatggcagccaagaagagttaaaattaatgatgacc
ctaatgaaaccccagtatttgattcctatacatggtgaattcagaatgctgcatcagcat
cgtcagctagcagagtcagtagggattccgatggagaatgtatttatcgtccaaaacggt
gagacgattcaaatcgcagagggaagggcatccctggggcccaaagtaccatccggcaat
agcctggtagacgggctggtaactggtgatgtaggtaatattgtactgcgggaccgtaaa
aaactttcctcagacggtatgctgattattgtgatgactctgagcaaaaacgagaagcaa
atgctcgctgcgccagaggttatatccagaggttttgtatatgttaaggattccgaagag
ttgatgaatcagattcgcgacacgattatgaccacagtgaacgagttaacagaaatcgaa
atgagtcagtggggcctgattaagcagatgttaaaagataatgtgggtcagtttatttac
agccagaccaagagaagacctatgattttacctatcattattgaggtatag
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