Paenibacillus polymyxa SQR-21: PPSQR21_012210
Help
Entry
PPSQR21_012210 CDS
T03178
Name
(GenBank) DNA polymerase ligd, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPSQR21_012210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_012210
Enzymes [BR:
ppq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPSQR21_012210
DNA repair and recombination proteins [BR:
ppq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPSQR21_012210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AHM64881
LinkDB
All DBs
Position
complement(1437750..1438652)
Genome browser
AA seq
300 aa
AA seq
DB search
MGRAVKGTITIEGHEIAITNPDKPLWPEAGVTKALYLRKLAVLAPYLLKYCHQRLLTVIR
WPHGIHGDFFYQKNAPHPRPDYIETALHDGIEYIVLGKLPQLLWLGNQAALEFHPSLHRT
GSQLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLDSVPKTSGATGVQIIVPIRTGI
TFDELRSIGLLVGQFVTEKHPNLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRQDVSPLDYHLLNIEERLNQVGDLIDKVPPQPVEDLLKHMRSKTHPT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagctgttaaaggtacgattacgattgaaggtcatgaaattgcaatcacaaac
ccggataaaccgctgtggcccgaagcaggtgtaactaaggcgctatatcttcgcaagctt
gcggtattggccccctacctgctcaaatattgtcatcagcgtctattgactgtcatccgt
tggccacatggtatccatggagattttttttatcagaaaaatgccccacatcctcggcca
gactatattgaaaccgctctgcatgatggcattgagtatatcgtgcttggcaagctgccc
caactactctggctcggtaatcaagctgcgttggaatttcatccctctctgcacagaaca
ggaagccaactgccctgtgaatggatgattgatctggatccatccagagaagtcgagcca
cgtattatggaggccgcctccattgtaggcgaagtattggcttcgctggggttggactct
gtccccaaaacctccggggccacaggtgtacaaattatcgtcccgatccgtacaggcatc
acctttgacgagctacgcagcatcggactgttggttggacaatttgtgacggaaaagcac
ccgaatctgttcacactggaacggttaaagaaggatcgtggaacagccatctattttgat
tacttgcagcattatcagggaaaaaccctagccgctccttatactcctcgggcacgtccc
ggtgctacggtctcgactccgctaacctgggaagaggtacggcaagatgtgtcaccactt
gattaccatttgctaaatattgaggaacggttaaaccaggtaggcgacttgatcgacaag
gtgcctccccagcccgtagaggacctcctcaaacatatgcgctccaaaacacacccaacc
tga
DBGET
integrated database retrieval system
