Poeciliopsis prolifica (blackstripe livebearer): 129372360
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Entry
129372360 CDS
T09758
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03013
Nucleocytoplasmic transport
pprl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129372360 (upf1)
03015 mRNA surveillance pathway
129372360 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprl03019
]
129372360 (upf1)
Enzymes [BR:
pprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129372360 (upf1)
5.6.2.5 RNA 5'-3' helicase
129372360 (upf1)
Messenger RNA biogenesis [BR:
pprl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129372360 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129372360 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
129372360
NCBI-ProteinID:
XP_054905583
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVAKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGHQGNGPNSQA
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcaccgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgagggtcttcacaatggaggaatggatgactctgtggccaaaaccagccagttg
ttgggcgagctcaactttgaggaggacgaagaagacacctactacaccaaagatcttcca
atacacgcatgcagctactgcggcatccatgacccagcatgtgtggtgtactgcaacacc
agtaagaagtggttctgtaacggccgtggtaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgacactgcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccggct
aaagccgactctgtggtggtactgctctgcaggcagccgtgcgcgagtcagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcagagcaagagcagctccgcgcccgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggcgctactttagaagac
ctggagaaacccggagtggatgaggaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatcttcggccctttggtcaaactggaggctgattacgacaaaaag
ctaaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcaggtgatatgcggctgatgcag
ggcgatgagatctgcctgcgctacaaaggagatctggctcctctgtggaaaggcatcggc
cacgtcatcaaagtccccgacaactatggggatgaaatcgccattgagctgcgcagcagc
gtcggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaact
tcctttgacaggatgcagagcgccctgaagacgtttgctgtcgatgaaacctctgtgtcc
ggttacatttaccacaaacttctgggtcacgaggtcgaagacgtcaccatcaagtgccag
ctgccgaagcgcttcactgctccaggcctgccggatctgaaccactcacaggtttacgct
gtaaagacggtgctgcagcggccgctcagtctcatccaggggccgcccggcaccgggaag
accgtcacctccgccacgatcgtgtaccacctgtcccgacagggaaacggacctgtcctg
gtgtgcgctcccagtaacatcgccgtggatcagctgacggagaagatcgacaagaccggc
ctgaaggtcgtcaggttgtgcgccaagagccgggaggccatcgagtctccggtgtctttc
ctggcgctccacaaccagatcagcaacatggacagcatgccggagctccagaagctgcag
cagctgaaggatgagaccggggagctgtcgtctgctgacgagaagcgttaccgggctctg
aagcgcaccgccgagagggagctgctcatgaacgctgacgtgatttgctgcacctgcgtt
ggagccggagatccccgtctggccaagatgcagttccggtccattctgatcgacgagagc
acccaggccaccgagccggagtgcatggtcccggtggtgctgggagcaaagcagctgatt
ctggtgggcgaccactgccagctgggtccggtggtgatgtgtaagaaagcggcaaaggcg
ggtttgtctcagtctctgttcgagcgactggtggtgctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccggctctcagcgccttcccgtccaacatcttctacgag
ggctccctgcagaacggcgttacagccgctgatcgcatcaagaaaggcttcgacttccag
tggcctcagccggacaaacccatgttcttctacgtgactcagggtcaggaggagattgcc
agttctggaacatcatacctgaacaggaccgaggcagcaaacgtggagaaaatcaccacc
aggttgctgaaggcaggagcgaaaccggaccagatcggcatcatcacgccgtacgagggc
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctgtac
cagcaagtggaaatcgccagtgtggacgccttccagggcagagaaaaggacttcatcatc
ctgtcctgtgttcgagccaatgagcatcagggcatcggtttcctgaacgacccgcggcgt
ctgaatgtggcgctgaccagagcaaagtacggagtgatcatcgtagggaaccccaaagcg
ctgtccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctg
gtggagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaaa
ctggtcaacaccatcaacccgggaggacgtttcatgagcaccgccatgtacgacgcccgc
gaggcgctcatcccaggctccgcctacgaccgcagcagcgccgctggacgtccgtccaac
atgtacttccaaactcacgatcagatcgggatgatcggaaccgggccgggtcagatggcg
gccatgaacatcccgatacccttcaacctggtgatgcccccgatgcctccgcccagctat
ctgggtcagaccaacggcccggctgcaggccgcggtgccatgaaggggaaacctggccgt
ggaggaaggcagcgggtccgcggctcgggtcaccagggcaacgggcccaacagccaggcc
agccaggacggggcttcccagtccttctcccaggggccgctgactcagggttacatctct
atgagccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggat
agctacctgggcgatgagttcaagtcccagatcgacgtggctctgtcccaggactcgact
taccagggtgaacgtgcgtaccagcatggcggggtgactggactgtcacagtactaa
DBGET
integrated database retrieval system
