Pimephales promelas (fathead minnow): 120465051
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Entry
120465051 CDS
T08155
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120465051 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
120465051 (acin1a)
03015 mRNA surveillance pathway
120465051 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120465051 (acin1a)
03041 Spliceosome [BR:
pprm03041
]
120465051 (acin1a)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120465051 (acin1a)
Spliceosome [BR:
pprm03041
]
Complex C
Other components
EJC/TREX
120465051 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
Motif
Other DBs
NCBI-GeneID:
120465051
NCBI-ProteinID:
XP_039510558
LinkDB
All DBs
Position
Unknown
AA seq
1799 aa
AA seq
DB search
MADLEDVTLDGRPLHSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQKTSTHH
IGLQPNSRIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAAETDGIDHEDHTEANDSIC
TAPNQEVAPSLVDQHKGGTAVGVTASESDELKEKETLGQPSPSAPAQAGAIASLSVRVVG
ERGPTSSHVMADSDDDSEGGDDNDGEEEEWNVKAQRSRRAQPPKSQPVRERSGGSQQQQQ
PPPQHIPLLSQQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPSRQRISSSSSSASSS
SDSRSSSPEPAGDTERRPGPLTLLARKMESEGAFSGAGKRDREGGHQEGVVSAITHTANA
ASVLSYPSSVISNQGVSVVRTAVTDESDGTKRDEGSHLLWEQENKKRERQGKQGRLKALE
KEREEREKVLEQERAQVLERERLEREEALKQERERALQREKEEKEKALQREREERERLER
EQALEREKQEKERLERERREAMEQERLEKERLEKERQEREQALEREKLEKERQQAIEKER
LERARLEKERQEREQALERERLEKEQLEKERQEREQALERERLERERLEKEKQEREQAIE
RERLERERLEKERQEREQALERERLERERLEKEKQEREQALERERLERERLEKEKQEREQ
ALERERLERERLEKEGQEREQALERERLERERLEKERQDREQALERERLERERLEKERQE
REQALERERLEKERLEREQALERERLERERLEKERQDREQALEREKLERERLEKKREERE
QALERERQEREKALEMERQEKERQEREQALERERLEREAALEKERREIERVKEQERLERE
RALEIEKNEREAALERKRQERERLEKEKALEEEHEREVQRKAEQERALKKQREEQESALK
EEKQRALEESERLLEQKRVQEEKEKALKHEQKEEQEKESRLPPWKRGRDIGGFSSPSDKP
DESKAGEPQRASKDTQSSESFPQQSSTLATPPSPQSSSKKSRFLRDAPVTVPLPCSPTSV
LKRPRTFSDSPMSQAPSIPLASKPDELVQEDAQLPQTSVLVAAPHEVDSKTPKVATQQHA
PQEEEKMETSKNSLASKDTKHEMFRRTEDEKKRGRERVKEVEKKERKSSSSSSSDSSSSD
SDSGSSSSSRSSSSSSSSSSEGKSRSTSGGRRSKQAQKDSSSQPTEKVGQTVTEKLPTSQ
RKKRVLSDQEVKDVCNEDVIQTKKPCLEQQYEKMETRRRKDDIEEDDTNKDTTSEVKEAV
MAEPEKVTESSEESTTLKTFSARKISLGSSKPSPGVVSSEGEAETASSASAGRKRRWGSS
TAVTAKKPSISITTDSLKSLIPDIKASLGQEAVLDLHPEEIHLSGEEEGGERGDQELKIR
RTVTQVVPSDTQENGQKESKRSEHEDEEERSEERDRLSQEEKMEGSNQVSMKTEPPSPWR
DVDMKTVAPSDTLIRRSISQQKSGVSITIDDPVRTTKQPSPPRGKLSNIVHVCNLVRPFT
LGQLKELLNRTGTLVEEGFWIDKIKSHCYVTYSNAEEAMATRTALHGVKWPQSNPKFLSV
DFCMQEEVDFHRGLGPAGEKPTEEPRGAAAAGPGRPVPLPLLPERDQWAEREREMERREK
SRAEREWDRDKVRDFSKPGDETGARRSRSRDRERRRKERGKSKERKTDKKEKGPEEPPAK
LLDDLFRKTKAAPCIYWLPLTEEQAAQRVAARAERMREREKRWKEMEEEDKKREEEHRER
MKTSGAAGGDTERDRDRGREREREGDKRKEGYRRPAGNSASGSRRSRSRSGPLPRDRRR
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggaggccgctccattcgctccgggtagcg
gatttgaaagcggcattggaagagagagggcttccgaaaagcggacagaaaaatgctctc
atcaagaggctcaaaggggctcttatgttggagaaccttcagaaaacctccactcatcac
attggcctgcagcctaactcccggattggggaggaaatgagtcagaacagcttcattaaa
cagtacctggccaaacagcaagagcttctcaggcagcgattggagagagaggcacgagag
gcagctgaaactgatggaatagaccatgaagaccacacagaagccaatgacagtatctgt
actgcccctaaccaggaggttgctccctccttagtcgaccaacacaaaggaggtacagca
gttggtgtgactgcaagtgagagtgatgagctcaaagaaaaagaaacactcgggcagcca
tccccctccgcaccggcccaggctggcgcaatagcctctttgtcggtgcgggttgttggt
gaaagaggaccgacttcaagccatgtaatggctgacagtgatgatgacagtgaaggtggg
gatgacaatgatggcgaagaggaagagtggaacgtcaaagctcaacggagtcgtcgagca
cagcctccaaaaagccaaccggtgagggaaagatctggtggctcgcagcaacagcagcag
ccacccccccaacatatacctttactttcacagcagctcagacagcccactcctccccca
tctcctcctcctgaactttctttcccactcccagacacccctaaacagagtccccctagt
cctggagagcccccgtctaggcagcgcatatctagctcttcgagctctgctagttccagt
agtgacagtcgtagcagtagccctgaaccagcaggggacacagaacgcagaccaggccca
ttgaccttactggcacgcaaaatggagtctgagggagctttctctggggcaggaaagcgt
gacagggagggaggccaccaagagggagttgtgtccgcaattacccacacagctaatgca
gcgtcagttctgtcataccctagttcagtgatctccaaccaaggtgttagtgttgttagg
acagcagtgacggatgagagtgatggcacaaagcgggatgagggtagtcatcttttatgg
gagcaagaaaacaaaaagagggaaaggcaagggaaacaaggaagactgaaagccctggag
aaggagagagaggaaagggaaaaggtattggaacaagagcgagcacaagttttggaaagg
gaaagactggaacgagaagaagctctgaaacaggagagggagagggctttacagcgagaa
aaggaagagaaagaaaaggccttacagcgggagagagaagagcgggagagattggagaga
gaacaagctttggaacgagagaagcaagaaaaggagagactagagagagagaggcgggaa
gcaatggagcaagagagattggagaaagagaggcttgagaaagaaagacaagaacgagaa
caagctttagagagggagaaacttgagaaagagagacagcaagctatagagaaggagaga
ttggagagagcgcggcttgagaaggaaagacaagaacgagaacaagctcttgagagggag
agattggagaaagagcagcttgagaaagaaagacaagaacgagaacaagctctagagagg
gaaagattggagagagagcggcttgagaaggaaaaacaagagcgagaacaagccatagag
agggagagattggagagagagcggcttgaaaaggaaaggcaagaacgagaacaagctcta
gagagggaaagattggagagagagcgacttgagaaggaaaaacaagagcgagaacaagcc
ttagagagggagagattggagagagagcggcttgaaaaggaaaaacaagagcgagaacaa
gccttagagagggagagattggagagagagcggcttgaaaaggaaggacaagaacgagaa
caagccttagagagggagagattggagagggagcgtcttgagaaggaaagacaagaccga
gaacaagctctagagagagaaagattggagagagagcggcttgagaaagaaagacaagaa
cgagaacaagccttagagagggagagactcgagaaagagagactagaacgagaacaagct
ctagagagggagagattggaaagggagcgtcttgagaaggaaagacaagaccgcgaacaa
gctctagagagggagaaattggagagagagcggcttgagaagaaaagggaagaacgagag
caagctttggaacgagaaagacaggaaagagaaaaggctcttgagatggagaggcaggaa
aaagaaaggcaagaaagagagcaagctttagaaagagagagactggaaagagaagctgct
ttagagaaagaaagacgagaaattgagagggtcaaagaacaagaaaggctggagagagag
agggctttggaaatagaaaaaaacgaaagagaagctgctctggaacgcaagaggcaggag
cgagaaagacttgaaaaggagaaagctttggaggaagagcatgaaagagaagtgcagaga
aaagcagagcaagagcgagcattgaaaaaacagagagaggagcaggagtctgctttaaaa
gaagagaagcagagagccttggaggagagtgaaagacttttggagcaaaaaagagtgcag
gaggagaaagaaaaggctttgaaacacgaacaaaaggaggaacaagagaaagaaagtcgt
cttcctccatggaagcgtggtcgtgatatcggtggtttctcgagtccatcggataagcca
gatgaaagtaaggctggggaaccacaaagggccagcaaagatactcaatcttcagagtct
tttccacaacagtcatccactctcgcaacaccaccatcccctcaatcttcttccaagaag
tcccgcttccttagagatgcccctgttacagttcctctcccatgttcgccaacgtctgtg
ctaaagagacctcgtactttctcagacagtccgatgtcacaagccccctcaattccatta
gcatctaaacctgatgaactggtgcaagaagatgctcagctccctcaaacatcagtcctt
gttgcagcaccccatgaggttgatagcaagaccccgaaggtggccacccaacaacatgca
ccacaagaggaagagaagatggagacatccaagaacagcttggcaagcaaagacactaaa
catgagatgttcagaagaaccgaggatgagaagaaaagaggaagggaaagggtaaaggag
gtggagaaaaaagaaagaaaatcatcatcatcgtcgtctagcgattcctcttcatccgac
tcagattctgggtcttcatcctcctcgcgctcctccagttcatcatcatcatcatcatca
gaggggaaaagtcgttccacttcaggtggtagaaggtctaaacaggcccagaaagattct
tcatctcagcccacagaaaaagttggtcaaactgtgactgaaaagcttcctacatcccag
cgcaaaaaacgggtcctctcagaccaggaggtgaaagatgtttgcaatgaggatgtcatt
caaaccaagaaaccctgccttgaacaacaatatgagaagatggaaacaagaaggagaaag
gatgatattgaggaagatgacactaacaaagacactaccagtgaggtgaaggaggctgtc
atggcggagcctgagaaggttacagagagcagtgaggagagcaccacgctaaagaccttc
tcggcccgaaagatctctcttggcagcagcaaaccgtctcctggggtggtgagttcggaa
ggggaagcggagaccgcaagcagtgctagtgctggcaggaagagaagatggggctccagt
acagctgtcactgccaagaaaccctccatcagtatcaccacagactctttgaagtcttta
ataccagacatcaaggctagcttgggtcaagaggctgtgttagacctgcatccggaggag
attcatctctctggggaagaggaaggaggagagaggggtgaccaagagctgaaaattaga
cgaactgttacacaggttgtgccctctgacacacaagagaatggacagaaagaatccaaa
agaagtgagcatgaggatgaggaagaaagaagtgaagagcgggatagacttagccaggag
gaaaaaatggaaggctccaatcaggtttccatgaagacagagccgccgtccccttggcga
gatgtagatatgaagacagtcgctcccagtgacacgctgattcgtcgttcgattagtcag
caaaagtctggcgtgagtatcaccattgatgacccggtccgcacaaccaaacaaccctct
cctcctcgtggcaagctgtctaacattgttcatgtctgcaacctggtgaggccgtttacc
ttggggcagctgaaggagctgttgaaccgcacagggactttagtggaggaaggtttctgg
attgacaagataaaatctcattgttacgtcacatactcaaatgcagaagaggcgatggcc
actcgtacagcattacacggggttaaatggccccagagtaatccaaagttcctcagtgtt
gacttctgcatgcaagaggaggtggacttccacaggggtttgggtccagcaggagaaaag
ccaacagaggagccccgtggggcggcagcagctggacctggccgtccagtacccctgcct
ctcctgccggagcgtgaccagtgggcagaacgagagagagaaatggaaaggagggagaaa
tcgcgtgcagaaagggaatgggaccgagataaggtgagggacttcagcaaacctggagat
gaaactggcgccagaagatcacgttcacgagatcgtgagaggaggcgcaaggaaagaggg
aagagcaaagagaggaaaaccgataagaaggaaaaaggacccgaagagccacccgctaaa
ctgctggatgacctcttccgcaaaaccaaagccgctccatgcatatactggctccccctc
actgaggagcaggcagcacagagggtagcggctcgtgccgagcgcatgagggaaagagag
aagaggtggaaggagatggaagaggaggataagaaacgtgaggaggagcaccgggagagg
atgaagaccagcggagcagccggaggagacactgagagagaccgagacagaggtcgagag
agggagcgagagggggacaaacggaaggaaggatatcgcaggcctgccggaaacagtgca
agcgggagcaggaggtcccgaagccgcagcggtcctctgcccagagatcggcgacgctaa
DBGET
integrated database retrieval system
