Pimephales promelas (fathead minnow): 120468745
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Entry
120468745 CDS
T08155
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120468745 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
120468745 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120468745 (thoc1)
03041 Spliceosome [BR:
pprm03041
]
120468745 (thoc1)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120468745 (thoc1)
Spliceosome [BR:
pprm03041
]
Complex C
Other components
EJC/TREX
120468745 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120468745 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
120468745
NCBI-ProteinID:
XP_039513255
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MSPPSLFDFTEARDAFTAATKSAVDIRNCKPLTSAFSHLPGNETEKKATLDQALRGVLEE
QIVKQKVNVEDFLSLIYISIDGVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKANTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQDSTLGLQHAEVKEDGMEVEEGEMGDEDAPAPCSIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSYKLDDMQASKRKMKEMRTSAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGCVLNDDQSLWIEDTAKL
VYQLLRETPPDGDKFASMVEHILNTEDNWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP
EDFLGKGPDRKIIMGNDELTRLWNLNPDNMEACKSESREFMPSLEEFFVEAIEQADPTNM
VEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDLPS
EEIKTGEEDDDENGDNLLKESNDSPSIRSKAVTNSQMDEIAGKLGSRWKTLADQLEMSEK
EIRVIESDSEDVELQAKMLLVAWQDREGPQATMECLVTALNTAGFRNITDSLNET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgtctctcttcgacttcactgaagccagagatgcatttacggctgccact
aaaagtgctgtggatatcaggaactgtaaacccctgaccagcgcgttcagtcatctgcct
ggaaatgaaactgagaagaaagccactctcgatcaagctctgcgtggagttcttgaagag
caaatagtgaagcagaaagtgaatgttgaagatttcctttctctgatctacatcagtata
gatggcgtcactgaaggcatctgctcggctaccactcctttccttctgctgggagacgtt
ctcgactgtcttcctctggatcagtgtgacaagatcttctcctttgttgaagaaaacgtc
tctacgtggaaggctaatacgttttactccgctggaaaaaactacttgttaagaatgtgc
aatgatctcctcagaagactctccaagtctcagaacacagtgttctgtggacggatccag
ctgtttttagcacgtctcttccctttgtccgaaaaatcaggactgaacttacagagtcag
ttcaaccttgataacatcaccgtgttcaacaagaatgagcaggatagcacacttggactg
cagcatgcagaagttaaggaggatgggatggaggtggaggagggagagatgggtgatgaa
gatgcacccgctccgtgctccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgtacaatgctacgacaagttctcatggatgactttc
cttaagtattcagatgagactctagctgtgttcaagagctataaactggatgacatgcaa
gcatcgaagagaaagatgaaggagatgaggacctctgctggagaccatgtctacttcgcc
aagttcctcaccagtgagaagctgatggaccttcagttgagtgacagcaacttcagacga
cacattctgcttcaatacctcatcctcttccagtatctcaagggccaggtcaagttcaag
agttccggctgtgttttgaatgatgatcagtctttgtggattgaggacacagctaaacta
gtctatcagttactgagagaaacccctcctgatggcgacaagtttgcatctatggttgag
cacatcctaaacacagaagataactggaactcttggaaaaatgagggctgcccaagcttt
gtgaaagagagacccgcggagaccaaacccatccgccccagccgaaagagacaagcacct
gaggactttttggggaaaggtcctgatcggaaaatcatcatgggaaatgacgaactcacg
agactctggaatctgaacccggacaatatggaggcctgcaagtcggaaagcagggaattc
atgccatcactggaggagttttttgttgaagctattgaacaggcagatccaacaaacatg
gtggaggatgagtacaaagttgtgcgcaactcaaactacggctggcgagccttgcgattg
ctgtccaggaggagtcctcacttctttcagcccaccaatcagcagttcaagagcctggca
gattatctggagaacatggtcatcaaactggccaaagagcttcctaaagaccttccttct
gaggagataaaaacgggagaggaggatgacgatgagaatggagataacctgttgaaagag
agcaatgacagtcccagcattcggagcaaggcggtgaccaacagtcagatggacgagatc
gcaggcaagctcgggtcccggtggaagacgctggcggatcagctggagatgagcgagaag
gagatccgcgtgatcgagtctgacagcgaggatgtcgagctacaggccaagatgctgctg
gtggcctggcaggaccgagaaggccctcaagccacgatggagtgcctggtcacggccctc
aacaccgctgggttcaggaacatcacagatagcctcaacgaaacataa
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