Pimephales promelas (fathead minnow): 120469650
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Entry
120469650 CDS
T08155
Symbol
col5a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120469650 (col5a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120469650 (col5a1)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120469650 (col5a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
120469650
NCBI-ProteinID:
XP_039514694
LinkDB
All DBs
Position
Unknown
AA seq
2050 aa
AA seq
DB search
MDTPIRWKVKRRFKEVRLSVLLAFLMFVTSRVSAAEPADLLKILDFHSLPEGVTKTTGFC
THRKSSKGPDVAYRVTKDAQLSAPTKQLYPSSVFPEDFSILATMRPKKGSQSFLLSVYNE
QGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISVHKQTITLILD
CKKKVTRTLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLMIVSDHRAAFDYCEHYSP
DCEVPAPEQPQNQDPNTDEYNTEDDNYYYEYPYYEDMDGEKTAETATDDATGSETEDLTV
SVPDSGRVVSSVITSGTGGSSSSSSSSSSSSSSSTSTTANGEDSYGGYDGYENGYDTYYD
ESTSRPDGSRTITITSTGTGAGGEVDFGLGEVDMGLGGDLDRRIITSSSSSSSSSGGGGG
DGIVTIISNGTSGSSSRISIGSGSSSGSGSRISIGSGSSTGSSSGSGSSSSRISTGSSSS
SGSGSSSRISIASGSSSGGSTGSSSSSTSTSVDAGYDDTLYGEGEDLTYGEGYGEGYGEG
DYNVGGGGSSSSSSSSSGSAGGGTVSVGGGAVSSSGSVGGGSATAGASAGAGSVATGGQG
GIGGEAHSIDVDTFKEESIGDYTDAELEKMYGYDDLYTDGNKALPAETDEFYGQVDGLRG
EKGQKGEPAIIEPGMLVEGPPGPEGPTGLPGPPGSTGPPGSAGDPGERGLPGRAGLPGAD
GLPGPPGTVLMLPFRMSTGGDSGHKGPAVSAQEAQMQAIMQQARLAMRGPTGPMGLTGRT
GPLGPPGVSGLKGESGEVGPQGPRGPLGSAGPPGKPGRRGRPGSDGARGMPGQTGTKGDR
GFDGLAGLPGEKGHRGETGPQGPPGPSGEDGERGDDGEVGPRGLPGEPGPRGLLGPKGPQ
GAPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPNGKP
GLPGMPGADGPPGHPGKEGPSGEKGNLGPSGPQGPIGYPGPRGVKGADGVRGLKGGKGEK
GEDGFPGFKGDMGIKGDRGELGAAGPRGEDGPEGPKGRSGLPGDPGPLGPIGEKGKLGVP
GLPGYPGRQGPKGSQGFQGFQGASGEKGTRGTLGKPGPRGQRGPTGPRGERGPRGPTGKA
GPKGNSGSDGPPGPPGERGLLGPQGPAGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPAGPTGKD
GPPGLRGFPGERGLPGPVGSAGLKGSEGPPGPPGPAGSPGERGPAGPAGPTGLPGRPGPQ
GPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPIGPPGEDGDKGEIGEPGQKGGK
GDKGEQGPPGPTGPQGPSGQPGPSGADGEQGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQ
GLPGPHGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNPGSVGEKGDSGEA
GEPGPQGDVGPPGPRGERGEKGESGPAGSAGPPGPKGPPGDDGPKGSPGPSGFPGDPGPP
GEPGPSGLDGAPGDKGDDGEPGQPGSPGPTGETGPTGPPGKRGPHGPAGPEGRQGEKGAK
GESGLEGPAGKTGPVGPQGSPGKPGPEGLRGVPGPVGEQGLPGAPGPDGPPGPMGPPGLP
GLKGDTGIKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTSGLKGDTGIAGPAGPLGPI
GPPGHPGPPGPKGAKGSSGQTGPKGETGVPGPPGVPGPPGDVIHPLPIQSSPKRAKRNID
ASQMMDDAADANYKDYEDGMEEIFGSLNSLKLEIEQMKHPLGTESNPARTCKDLQLCHPD
FPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPEKKSEGAKPTSWVKENPGSWFSEFK
RGKLLSYVDAEGNPIGVVQMTFLRLLSATARQNLTYNCFQSVAWYDQDLDNYDKAIRFLG
SNDEEMSYDNNPYIRAAFDGCALKKGYEKTILEINTPKVEQVPFVDIMFNDFGGATQKFG
FDVGPACFIG
NT seq
6153 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctataagatggaaagtaaagcggaggtttaaggaggtgcgactgtcggta
ctcctagcattcctgatgtttgtcacctcacgagtaagcgcagctgagccagccgatctc
ctaaagattttagattttcacagtttgccggagggtgtaacaaaaactacaggcttctgc
acacacaggaagtcatcaaaagggcctgatgtcgcctacagagtcacaaaagatgcacag
cttagcgctcctacgaaacaactctacccctcgtccgtatttcctgaggacttctccatc
ttggcgacgatgaggccaaagaaaggcagtcagtcgttcctgctgtctgtgtataatgaa
cagggcatccagcagctcggcctggaagtgggacgctctcctgtcttcctgtacgaggat
cacttgggcaaacccggcccggaggactacccgctcttcagaggggtcaacctggcagac
ggaaagtggcaccgtgtggcaatcagcgttcacaaacagaccatcactctgattttggac
tgtaaaaaaaaggtgacacggacgctatccagaagccctcaccccatcatcgacaccaaa
ggcatcgtggtcttcgggacgcgtatcctggatgaggaggtgtttgagggggacatccag
cagctgatgatagtatcggaccatcgtgctgcgtttgactactgtgagcactacagcccc
gactgtgaggttcctgccccagaacaaccccaaaaccaagacccaaacactgatgaatat
aacacagaggatgataactactattacgaatatccctactatgaggacatggacggggaa
aagacagcagaaacggcaactgatgacgcgactggaagcgaaactgaagacctaacggtg
tctgttccggatagcggtcgcgtggtttcctcagttatcactagtggaacaggaggctcc
agtagttcatcgagtagctcatcctcatcctcttcatcctccacttctaccaccgctaat
ggtgaggactcgtatggcggctacgatggatacgagaacggatatgatacatactacgac
gagtcgacctcacggccggatggctcccgaaccatcacgatcactagcacaggcactggt
gctggaggagaagtagattttggactgggtgaggtggatatgggattgggaggagacctg
gataggcggataatcacatcatcatcatcatcatcatcgtcatcaggaggaggaggagga
gatggaattgtcacaatcattagcaatggaacctccggctccagctccagaatcagtatc
ggctccggctcaagctctggctccggctccagaatcagtatcggctctggctccagcact
ggctccagctccggctctggctccagcagttccagaatcagcactggctccagctccagc
tccggctccggctctagttctagaatcagtatcgcttccggctccagttctggaggtagt
accggctccagctctagctctacctctacctcagttgatgctggttacgatgataccctg
tacggtgagggtgaggatctgacctatggagagggatatggagaaggatacggagaggga
gattacaacgtgggaggaggcggcagcagcagcagcagcagcagttcttcagggtctgca
gggggcgggactgtttctgttggaggcggggctgtttcttccagtggctcagttgggggc
ggatccgccactgctggggccagtgcgggggcggggtctgttgccacgggaggacaggga
ggaatcggtggagaagcacattccatcgatgttgacacgtttaaggaggagtccatcgga
gattacaccgatgcagaactggagaagatgtatggttatgacgacctatacaccgacggc
aacaaagcgttgccggcggagaccgacgagttctatggacaggtggatggactgagagga
gagaaaggccagaaaggagagcctgcgatcattgaacccggaatgctggtcgaaggccca
cctggtccagagggtcccacgggtctccccggccctccaggttcaacgggacccccaggt
agtgctggagatcctggtgagaggggtcttcctggtcgcgctggtcttcctggagccgat
ggtcttccaggacctccagggactgtcctgatgttgcctttccgcatgagtacaggaggg
gacagtggacataaaggtcctgctgtttctgcccaagaggctcagatgcaagccatcatg
cagcaggccaggctggcgatgaggggtccaactggaccgatgggtttgactggccgtact
ggtcctctgggtcctcctggtgtgtctggactgaaaggagagtctggagaagtaggacct
cagggtcctcgtggtccactgggatccgcaggccctcctggaaagcctggtagaaggggt
cgacccggctcagatggagccagagggatgcctggacagacgggaacaaagggtgacaga
ggattcgacggtctcgctggtttgcccggtgaaaagggtcacaggggtgagacgggacct
caggggccgcctgggccttcaggagaggatggagaaagaggcgacgacggtgaggtcgga
cccaggggtctgcccggagaaccgggtcctcgtggtttgttgggccccaaaggtccccag
ggggcacctggacctcctggtgttactggcatggatggacatcctggacctaaaggaaac
attggtcctcaaggtgagccaggtcctcctggacaacaaggcaaccccggagctcagggg
cttcctggtcctcagggagcgatcggacctccaggagagaagggtcccaatggaaaacca
ggcttaccgggaatgccaggagccgatggacctccgggtcacccaggaaaagaagggccg
tcaggagagaaaggaaacttgggcccttctggtcctcaagggccaatcggatatcctggg
cctcgaggtgtaaagggtgctgatggagtccgtgggctgaaaggaggcaagggtgaaaag
ggagaagatggattccctggatttaaaggagatatgggcatcaaaggtgacaggggagaa
cttggcgctgctggacccagaggtgaagacgggcctgagggacccaaaggaagatctggt
ttgcctggagatcctggaccactcgggccgataggagagaagggtaagcttggtgtacct
gggttaccaggctatccgggaagacaaggccccaagggttctcaaggattccagggattc
caaggagccagtggagagaaaggcacaagggggacactagggaagccaggccccagagga
cagagaggacccacgggaccccgtggtgaacgagggccaaggggaccaacagggaaagca
ggaccaaagggcaattcaggaagtgatggccccccaggaccacccggtgaacggggttta
ctgggaccacagggacctgctggattccctggccctaagggtccacctggacctcccgga
aaggacggactgcccggacaccctggccagagaggagagactggtttccaaggtaaaacc
ggacctcccggacccccaggtgtagtcggacctcagggaccaacaggcgagacaggacca
atgggagagcgaggtcaccctggacccccaggaccacccggtgaacagggtctacctgga
tctgcgggcaaagagggagcgaagggagatccaggtccagcagggccaaccggtaaagat
ggacctccaggactcagagggttcccaggcgagagaggtttaccaggccctgtgggatca
gctggcttgaaaggaagtgaaggacctccagggccacctggacccgctggttctcctggt
gaacgtggtcctgctggcccagctggtcctaccggcctcccgggccgtcccggacctcaa
ggacccccgggccccgctggagagaaaggaggacctggtgagaaaggacctcaaggccca
gctggtagagatggtattcagggacctgttgggcttccaggcccggctggacccatcgga
cccccaggagaggatggcgataagggcgagattggagagccaggacagaagggaggcaaa
ggtgacaagggcgagcagggtcctccagggcctaccggtccccaaggtcctagtggtcag
ccgggcccttctggtgctgatggagagcaaggtcccagaggtcagcagggtctttttgga
cagaagggagatgaaggctcacgaggctttccaggaccacccggacctgtcggccttcag
ggcttacctggaccccatggtgagaaaggagagactggtgacgtcggtcaaatgggtcca
cccggtccaccgggccccagaggcccttccggacccccaggagctgacggaccacaggga
cctccgggaggtatcggaaacccaggatcagtgggagagaagggagactctggtgaagca
ggagaaccaggcccacagggagacgtcggccctccaggtccaagaggagagcgaggagaa
aagggagagtccggacccgctggttccgctggtccccccggaccaaaaggaccaccagga
gatgatggtcctaaaggaagtcctggtccaagcggtttccctggtgatcccggtcctcct
ggagagccaggtccttctggcttggatggtgctccaggtgacaagggtgacgatggagag
cctggtcagccaggttcacctggacctactggtgaaactggccctactggccctccagga
aagagaggacctcatggacctgctggacctgaaggaagacagggagagaagggtgccaag
ggtgaatctggtctggagggtccagctggtaagacgggtccagttggccctcagggaagc
ccaggaaaacctggtcctgagggtctgagaggtgtgcctggaccagtgggagagcaagga
ctgcctggtgctcctggacctgatggaccccctggaccgatgggtcctcctggcctgcct
ggactaaagggagatactggtattaaaggtgaaaagggtcatcctggtcttattggactc
attggacctccaggagaacagggagagaagggagacagagggctgccgggtccacaggga
acctcaggacttaaaggagacactggtattgcaggacccgctggacctcttggacccatt
ggaccccctggtcacccgggtcctcctggtcctaaaggtgctaaaggatcatctggtcag
actggcccgaagggtgaaactggagtcccgggacctcctggagttcctggtccacctggt
gatgtcatccaccctctgcccatccagtccagcccgaaacgggcaaagaggaacattgat
gccagccagatgatggacgacgctgcagatgccaattacaaagactatgaggatggcatg
gaggagatattcggctctctaaactctctcaaactagagattgaacagatgaaacatccg
ctgggcacagagagtaaccccgcccgcacctgcaaagacctacagctgtgccacccggat
ttcccagatggtgaatactggattgatccgaaccagggctgctccagagactcttttaaa
gtgtactgtaacttcacagcgggtggcgagagttgcatcttcccagagaaaaagagtgaa
ggggccaaacccacctcttgggtgaaggagaatccagggtcgtggttcagtgaattcaaa
cgtggtaaactgctctcgtacgtggatgcggagggcaatccgatcggagtggtgcagatg
acattcctgcgtttactcagtgccacggcgcgacagaacctgacctacaactgtttccag
tcagtggcttggtacgaccaggatttggacaattacgataaagccatccgattcctgggt
tccaacgatgaggaaatgtcttacgataacaacccgtacatcagagccgccttcgacggc
tgcgcgttgaaaaagggctatgaaaagactattcttgagatcaacacaccgaaagtggag
caggtaccgtttgttgacattatgtttaacgatttcggcggagcgacgcagaagttcggc
tttgacgtcggaccggcctgcttcatcggctaa
DBGET
integrated database retrieval system
