Pimephales promelas (fathead minnow): 120472137
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Entry
120472137 CDS
T08155
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120472137
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120472137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_6
zf-RING_10
eIF3_subunit
zf-RING_5
U-box
Exonuc_VII_L
DUF4239
DUF5446
Motif
Other DBs
NCBI-GeneID:
120472137
NCBI-ProteinID:
XP_039518143
LinkDB
All DBs
Position
Unknown
AA seq
544 aa
AA seq
DB search
MAEARFSQDEFMCSVCLDLLKDPVTIHCGHSYCKICITDCWDQEDEKSVYSCPQCRQTFS
PRPALGKNTILAELVEKLKKTKLPADCYAGAGDVECDVCTGRKHKAVKSCLVCQESYCQT
HFDRHEELFSRKPHKVIDATGRLQDMICRKHDKELEMFCITDQQCICVWCKEYEHKNHNT
VSTAAQRTEKQKQLKETQMKIRQRIQQRQKDLHQLREDVKSHKRSAHTAVEDSEKIFTEI
IRSIERSRSEATQRIRDQEKTAVSRAEGRLERLEQEINDLRRRDAELEQLSHTQDHIQFL
QSFQSLSAPPESTDEPDVPFGSLSSFDGVRESVRQLRDKLEDFCKEEIKKISDGVTFTNM
NPKTRNDFLQYSHQLTPDLNTVNKHIRLSERNRVITHTDTEQSYPDHPDRFKCYPQVLCR
ESVCGRCYWEIEWTGDDGVFISVSYKIISRKGSGNEHVFGGNDQSWSLFCSSSSYSFCHN
NIRTDLPVKPIGRRIGVCVDHSAGTLSFYSVSDTMSLIHTVQTTFTQPLYPGFYVYSGSS
VKLC
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagctagattttctcaggatgagttcatgtgttcagtgtgtctggatctcctg
aaggatccagtgactatccactgtggacacagttactgtaagatctgtattacagactgc
tgggatcaggaggatgagaagagcgtctacagctgccctcagtgcagacagaccttcagt
ccaagacctgctttagggaaaaacaccattctggctgaactggtggagaaactgaagaag
actaaacttcctgctgactgttacgctggagctggagacgtggagtgtgacgtctgtact
ggaagaaaacacaaagccgtcaagtcctgtctggtgtgtcaggagtcttactgtcaaact
cattttgaccgtcatgaggaacttttctctcgtaaaccacacaaagtgattgatgccact
ggacgactgcaggacatgatctgccgtaaacatgataaagagctagaaatgttctgtatc
actgatcaacagtgcatctgtgtgtggtgtaaagagtatgaacataaaaaccacaacact
gtatcaactgcagcacagaggacagagaaacagaaacagctgaaggagacgcagatgaag
atccgtcagagaatccagcagagacagaaagatcttcatcagctgagagaggatgtgaag
tctcataagcgctctgcacacacagcagtggaggacagtgagaagatcttcactgagatc
atccgctccattgagagaagccgctctgaggcgacacagcggatcagagatcaggaaaag
actgcagtgagtcgagctgaaggacgactggagcgactggagcaggagatcaatgatctg
aggaggagagacgctgagctggagcagctttcacacacacaagatcacatccagttcctg
cagagtttccagtctctctcagctcctcctgaatctacagacgaacccgacgttcccttc
ggttctctctcctcttttgatggcgtgagagaatctgtccgtcagctgagagacaaactg
gaggatttctgcaaagaggagatcaagaagatctcagacggagtcactttcaccaacatg
aatcccaagaccaggaacgacttcctacaatattcccatcagctcactccggatctgaac
acagtgaataaacacatccgtctgtctgagaggaacagagttattactcacactgacaca
gagcagtcgtatcctgatcatccagacagatttaagtgttatcctcaggtgttgtgtaga
gagagtgtgtgtggacgctgttactgggagattgagtggactggagatgatggtgtgttt
atatcagtgtcatataagatcatcagcaggaagggatcgggtaatgagcacgtgtttgga
ggtaatgatcagtcctggagtttgttctgctcttcctccagttactcattttgtcacaat
aacatacgcactgatctccctgtaaagcccatcggcagaagaataggagtgtgtgtggat
cacagtgcaggaactctgtccttctacagcgtctctgacacaatgagcctcatccacaca
gtccagaccacattcactcagccgctctatcctgggttttatgtttattctggctcatca
gtgaaactgtgttga
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integrated database retrieval system
