Pimephales promelas (fathead minnow): 120477188
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Entry
120477188 CDS
T08155
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120477188 (pdzrn4)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120477188 (pdzrn4)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120477188 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
120477188
NCBI-ProteinID:
XP_039524598
LinkDB
All DBs
Position
Unknown
AA seq
789 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKEPIVVQVLRRGSSGRNQ
NSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIQTMEHEYYDC
PEYVASNQAEVDRAVEFECEEVELCRMNSQEKLGLTLCYRTDDEEDTAIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNREEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHHD
FLEELKMEILEEQKKDAKWSKRHEEASASTDTATCSSSILEKDSGVKCSFEESSEYEFLS
HPQTQTQKQLRDRWEAGSHMVPMDTVSLARQEKGQEGRLSENGVECDHFQQLLELKCQIS
NGGECGLVYRRSSTIECSLTEQSGVTRELHMLNEELRSIELECQSIMQAHQLRRSKHDSP
RTDKESRLRRGKLADINEYPERLQSEKLRDKDSSSAYNTAESSRSTPLGTEGSPDHSLQR
RVHLTNQRNLRSTQHLQSPYNSPILSLPSQSSPSYSRGHTYTSSTPPLQTPITSPGSQGP
SQAFSSSLEQSPSNPSESDPALPADDERCEKERNRNRVASARHYHSPYHSNPTTTQPPST
RHYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSQPGRIEWKVKVRADGTRYVARRP
TRDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAREQRRRREFMQ
RSRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGARAPEGTKVH
NAFLSVTTV
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacttgtgcacgctgcagaagagagaggagcactacaagctgctttacgag
attgcccaggtgaatggacgtgaattttcaaagtctggacatgagggaacggtggaggcc
atgcgaaaggaaccaattgtggtgcaggtgctgaggcggggatcctccggccggaaccag
aacagcctacaggaagtgtgtgtggtggacgtgtgtactcagacggacatcacctttgag
cacattatggctctggcaaagatgagacccactaccccgcctgtgccagacatttgccca
ttcctgctgtcggacagttgtcattccattcagactatggagcatgaatattatgattgt
ccagaatatgtggccagcaatcaggcagaagtggacagggcagttgaattcgagtgtgag
gaggttgaactctgtcgaatgaacagccaggaaaaactgggcctgactctttgttatcgt
actgatgatgaagaagatacagctatttttgttggtcaggttgaactcaacagcatagct
gcaagggatggacgcatcagagagggagacagaattttacagataaatggtcatgacgta
cagaacagggaagaggctgttgctctcctttcaaatgaaaattccagatccatagtgtta
cttgtcaccagacctgaaggacagatggatggaagctggcttgatgaggaccatcatgat
tttctagaggagctgaagatggagattttagaagaacagaaaaaggacgcaaagtggtca
aaaagacatgaggaagcctccgcaagtacagatacagcgacatgttcctcttccattctg
gagaaggacagtggtgtgaaatgcagctttgaggagagttctgaatatgaatttctctct
catccccaaacacagactcaaaaacaacttcgagacaggtgggaagcgggctcacatatg
gttcctatggacaccgttagcttagccaggcaggagaagggtcaggagggcaggctgagc
gagaatggggtggaatgtgaccatttccagcaactcttggagctaaagtgccagatcagt
aatggtggagaatgcgggttggtctacaggcgaagtagtaccatcgagtgcagcctgaca
gaacagagtggagtaacaagggagctgcacatgctcaacgaagagctgcgcagcattgaa
cttgagtgccagagcatcatgcaagcccaccagttgcgccgaagcaagcatgactcgccc
cgaacggataaggaaagtcgactgcgccgtggcaagcttgcagacattaacgagtatccc
gagagactccaaagtgagaagctcagagataaagacagctctagtgcctacaatacagcc
gaaagttcccgctcaactccactgggaacagaaggatcacccgaccactcgctacagcgt
cgagtccacctgaccaatcagaggaacttgcggagtacccaacacctgcagagtccctac
aacagtcccatcttgtctttacccagccaaagtagcccgtcttacagtcgtggccataca
tacaccagctccacaccacccttacagacccccatcaccagtcccggttcacaaggaccc
agccaggccttctccagcagcttggaacaaagccccagtaacccctcggagtcagaccca
gcgcttcctgctgatgacgagcgctgcgagaaagaaagaaaccgtaatagggttgcaagc
gctaggcactaccattcgccctatcacagcaaccccacaacaacccagcctcccagcaca
cgccattaccagagttacctacagctcctacaacaacattcctcttcctctctggaatac
tcccagagccagcttagcctcctcagcctccgtggacggcctggaccctcacaacctggc
cggatcgaatggaaggttaaagtgcgagcagacggaaccaggtatgtggcacgtcggccc
acgcgagaccgtatcctgcgcgaacgagccttacggatccgggaggagcggagcggtggg
atgactactgatgacgacgcagtgagcgagcttaagatggggcggtactggagtaaggaa
gaacgcaagcagcagttagcacgcgcgagagaacagcgacgcaggagggaattcatgcag
aggagccggcttgagtgcctcagggagaccatggggacggcaagtggggaggtcagcatc
ctggagctcagccataagaagatgctgaagaaacgaaacaagaagatccttgacaattgg
atgaccattcaagagctcatgagccatggagcacgagcacccgagggcaccaaagttcac
aacgccttcctttcagtcaccacagtttag
DBGET
integrated database retrieval system
