Pimephales promelas (fathead minnow): 120481178
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Entry
120481178 CDS
T08155
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120481178 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120481178 (ddx46)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120481178 (ddx46)
Spliceosome [BR:
pprm03041
]
Complex A
U2 snRNP components
U2 related factors
120481178 (ddx46)
Complex B
120481178 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
120481178
NCBI-ProteinID:
XP_039530574
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MGRESRHYRKRSSSRARSASRSKSRSPDSKRSKKEDPAGSRARSRRERTRSRERRRSRSR
DRKRPRRSRSRDRRRTSRERRRSRSKSRSRGRSKEKPENGEPSADKKKLKEEKEEERPED
QDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDEE
ETLAPVEPDPDGEEQEKEPAVELEEVPEEEAGEELDPLDAYMEEVKEEVKKFNMGTMKGG
NDKQKGGMSVTKVMTVMKTRKMPNTSKKKGELMENDQDAMEYSSEEEVVDLQTALTGFQT
KQRKVLEPVDHQKIEYEPFRKNFYVEVPELARMSPEEVNEYRLELEGIVVKGKGCPKPIK
SWVQCGISMKVMNALKKHSYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFR
HILDQRALGEGEGPIAVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAEL
KRGAEIIVCTPGRMIDMLGANSGRVTNLRRATYVVMDEADRMFDMGFEPQVMRIVDNVRP
DRQTVMFSATFPRSMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEI
LGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRL
LVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGYAYTFITADQVRYSG
DILKALELSSTPVPPELEQLWTGFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANERK
KLQKAALGLHDSDDDDAALDIDEQIESMFNSKKRVKDFSAPGSSGGPAVGVSGSVSSASA
PSAPSAGNIQKLEMAKKLALRIQVQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAKTIA
EQQAEKINAKLNYTPVEKLEEERQANDNSETVKRYEEELEINDFPQTARWKVTSKEALQR
IGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQ
NSYQPTSKGRYKVL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgggacgagagtcacggcactaccggaagcgctccagctcgagggcgaggtccgccagc
cggtccaagagccgctcgcccgactccaagcgctcgaagaaggaggatccggccggctca
cgggcccgcagcaggagagagcgcacacgcagccgagagaggaggaggtcacgctcccga
gaccgcaagaggccgaggcgctccaggagtcgggacaggagacgcaccagccgagagcgc
aggaggagcaggagcaagagcaggagcagagggaggagcaaggagaagccggagaacgga
gagccgagcgccgacaagaagaagctgaaggaggagaaggaggaggagaggccggaggac
caagactttgaccagaacacactggaggaggagatgaggaagaggaaggagcgcgtggag
aagtggagggaggagcagaggaagaaggccatggagaacatcggggagatcaagaaggag
ctggaggagatgaagcagggcaagaagtggagcctggaggatgatgacgatgacgaggag
gagaccctcgccccggtggagcccgacccggacggcgaggagcaggagaaggagccggcg
gtggagctggaggaggtgccggaggaggaggccggagaggagctggacccgctcgacgcc
tacatggaggaggtcaaggaggaggtcaagaagttcaacatgggcaccatgaagggcggg
aacgacaagcagaaaggaggcatgtccgtgactaaagtgatgaccgtgatgaagacgagg
aagatgccgaacacctccaagaagaagggcgagctgatggagaacgaccaggacgccatg
gagtattcgtcagaggaagaggtggtggacctgcagacggccctcacgggcttccagacg
aaacagaggaaggttctggagccggtggatcatcagaagatcgagtatgaacccttccgc
aagaacttctacgtggaagtgccggagctggcccggatgagccccgaagaggtgaacgag
taccgcctggagctggagggcatcgtcgtgaagggcaaaggctgcccgaagcccatcaag
tcctgggtgcagtgtggcatctccatgaaagtgatgaacgcgctgaagaagcacagctac
gagaagccgaccccgatccaggcgcaggccatcccggccatcatgtcgggccgagacctc
atcggcatcgccaagaccggcagcggcaagaccatcgccttcctcctgcccatgttcaga
cacatcctggaccagcgggcactgggggagggggaggggcctatcgcggtcatcatgacc
cccacccgagagctggctctccagatcaccaaagagtgcaagaagttctccaagtctctg
ggtctgcgtgtggtgtgtgtgtacggcggcacgggcatcagcgagcagatcgcagagctg
aagcgaggagcagaaatcatcgtctgcactcccggccggatgatcgacatgctcggagcc
aacagcggtcgcgtgacgaacctgcgcagagccacgtatgtggtgatggacgaggccgac
cgcatgttcgacatgggcttcgagccgcaggtgatgcggatcgtggataacgtgaggccg
gaccgccagactgtgatgttctccgccacgttcccgcgctcgatggaggcgttggcgcgc
aggatcctgtccaagcccatcgaggtgcaggtgggcggcaggagcgtggtgtgctccgac
gtcgagcagcacgtgatcgtcatcgaggaggagaagaagttcctgaagcttctggagatt
ctgggtcactatcaggagaagggatcggtcatcatcttcgtggacaagcaggagcacgcc
gacggtctcctgaaggacctgatgaaggcctcgtacccctgcatgtccctgcacggaggc
attgaccagtacgaccgggacagcatcatcaacgacttcaagaacggggcgtgccgtctg
ctggtggccacctctgtcgccgcgcggggcctcgacgtcaagcacctcatcctggtggtc
aactacaactgccccaaccactacgaggactacgtgcaccgcgccggacgcaccgggaga
gccggcaacaagggatacgcgtacaccttcatcactgcagaccaggtgcgctactctggg
gatatcctgaaagcgctggagctgtcctccacacccgtaccccccgagctggagcagctg
tggaccggcttcaaggagcagcagaaggccgagggcaagagtatcaagagcagcagcggg
ttctccgggaagggcttcaagttcgacgagacggagcacgcgctggccaacgagaggaag
aagctgcagaaggctgcgctcggccttcacgactctgacgacgacgacgcggctctcgac
atcgacgagcagatcgagagcatgtttaactctaagaagcgtgtgaaggacttctcggcc
ccgggctcctccggcggccccgctgtgggagtgagcggctcggtcagctcggcctccgcc
cccagcgctccctctgctggaaacatacagaagctggagatggccaagaagctggcgctc
aggatacaggtgcagaagaacctgggcgccgaggcacaggacgtgatgcagcaggccacg
aacgctatcctgcgcggcgggacgatgatcgcgccctcggtctccgctaagaccatcgca
gagcagcaggcggagaagatcaacgctaagctgaactacacgccggtggagaagctggag
gaggagcggcaggccaacgacaacagcgagaccgtcaagagatacgaggaggagctggag
atcaacgacttccctcagacggcccgctggaaggtcacgtcgaaggaagcgctccagcga
atcggagagtactcggaggctgccatcaccatacgagggacgtacttccccccgggcaaa
gagcccaaagagggcgagcgcaagatctacctggccatcgagagtgcgaacgagctggcc
gtgcagaaggccaaagccgagatcacacgcctcatcaaggaggagctcatacgcctgcaa
aactcctaccagccgaccagcaagggccggtacaaggtcctgtag
DBGET
integrated database retrieval system
