Pimephales promelas (fathead minnow): 120489012
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Entry
120489012 CDS
T08155
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120489012 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120489012 (patl1)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120489012 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
120489012 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120489012
NCBI-ProteinID:
XP_039541578
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEGLGEEEEEIDQFNDDTFGAGAIDDDWQEQHARLAELDELVRDD
LPGADDASSGDLPPAGSNAKPSPLPPPSSSSRLYSDIDERAGGDLAESLTRLILGSDPAI
AGVGTASSDRSHLPPKLPGQTPHPSTLAGLSPLQLSYQHHQHLLHRGPAPLSQINSHSIW
ENNMGFGPVNSGLVSQKEDKTLMSIIKEVGLPNRPPKLREEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMSQILNQQNNHPSAVHVRASVPLRYPPPFPERLSPNNLLSIANS
PLSHSPFPAGVGPVLSQIQRAQMLNSQFQRGPAPPLLQGGIGGFRPFFGQPGPRMGPHGP
PLSHAPIRHNTTHLHPQHRRMLNQRMQNRGLGDHVGGRGVGDRKNRDPYSNLMTQREKEW
VARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMSVRKGKRL
ISRLLPFLPQPQAAAVIMGIARNLPALAKKDKQDQVLCWLVEPVSAVIQAMSSTSLTDLL
QELQGREGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELL
KVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITSLSR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcttttgacgatgactgcaccctggaggaggaggaagggttggga
gaggaagaagaggaaattgaccagttcaatgacgacactttcggtgcaggggcaattgat
gatgactggcaggagcagcacgcccgccttgctgagctcgacgagctggtgcgagatgat
ctgccgggagcggacgatgcctcctccggtgaccttcctcctgctggcagcaatgccaag
ccttcgcccctccctccaccctcctcttcctcccggctttactctgacatagatgaacgg
gctggcggtgacctggcggagtcattgactcgtctcatcttgggttcggatcctgctatt
gccggagtgggcaccgccagctcagacagatctcatcttcctccgaagctgcccggtcag
actcctcatccctcaacattagctggactgtctcctctacagttgagctaccaacatcac
cagcatctcctgcacagagggccggctcctctttcacagataaactctcacagtatttgg
gaaaacaatatgggattcggtcctgttaactctggattagtctctcaaaaagaggacaaa
acacttatgtccattatcaaagaggtcgggcttccaaatcggcctcctaaactccgagaa
gaagggcgagatttgtccgaaagggttccgcctccacggtcctcctcacctgtgattgga
agtccacctgtaagagccgtgcctattggaacacctccaaaacagcccatgagtcaaatc
ctcaatcagcagaataatcacccttcagccgttcacgtgagagcctctgtgcctctgcgt
tacccacctcccttccctgagcgcctgtcccccaacaacctcctcagcatcgctaactcg
ccgttgtctcattctccgttccctgctggtgtcggtcccgttttgtctcagatacaaaga
gcacaaatgctcaactctcagttccagcgtggtccagctcctccattattacaggggggc
attgggggtttcaggccgttctttgggcagcctggtcctagaatgggtccccacgggcct
cctctcagccacgcacccatccgacacaacaccacccacctgcacccgcagcaccgccgg
atgctcaaccagaggatgcagaacagaggcctgggtgatcacgtcggcgggagaggggtc
ggagacaggaagaaccgagatccttacagcaatctaatgactcaaagagagaaggaatgg
gtcgcgagaatccaaatgatgcagcttcaaagcaccgatccgtatttggatgactactat
taccagaattactatgagaaaatggagaagcgtcaggagcgggacagagacaacaggaag
gagcacaccaccaaactcatcactcctcaggtggccaaactggagcacacctatcggcca
gtgcagtttgccggatcgttaggaaaactcactgtctccagtgtgaacaatccaaggaaa
atgattgatgccgtggtaaccactcgcagtgatgatgaggaaaaaagagagaagcaggtg
tggaataaaagacgacaaatcctttacactgtggagaagatgtacagtctactgctagaa
gtgcaagactttgagaagaagttcttgcaaacccctgagcaccaaagagatgccctgcta
gaacagcacaaaacccacacgctgcagctctacaactccctccgagagaaggagtgggac
gaccgagtgagcgatgagcagtgcctgatgatcatgtcggtgcgtaaggggaaacgcctc
atctccagactcctccccttcctgccacagcctcaggctgctgctgttatcatgggaata
gccaggaaccttccagccctggccaagaaagacaaacaagaccaggtactgtgttggttg
gtggagccagtctccgcagtgatccaggccatgtcgagtacgtccctcactgacctcctt
caggagctgcagggcagggaaggacagcttcccctcgtgctgcaaaataagttcggcgtg
acgctgctgtatctgatcctgagtgaaggagagcggatgcagagctcggatcccaactgt
cagctcatggacgataaccgctggactgagttggtgttctctgtgacccgggagcttctg
aaggtcccgtcctctgcgctctcatcgcccctgttcactcctccaaacctagtgtcgctg
ttctctcgatacgtggaccggcagagactcgagctcttgcaggagaagctacagatcaca
tccctgtccaggtag
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