Pimephales promelas (fathead minnow): 120489514
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Entry
120489514 CDS
T08155
Name
(RefSeq) tripartite motif-containing protein 16-like protein
KO
K12006
tripartite motif-containing protein 16
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120489514
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120489514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_6
Prok-RING_4
zf-RING_5
U-box
zf-RING_10
eIF3_subunit
DUF4239
DUF5446
Motif
Other DBs
NCBI-GeneID:
120489514
NCBI-ProteinID:
XP_039542332
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MAEARISQDEFMCSVCLDLLTEPVTIPCGHSYCKICITDCWDQEDEKSVYSCPQCRQTFS
PRPALAKNTILAELVEKLKKTKLPADCYAGAGDVECDVCTGRKHKAVKSCLVCQESYCQT
HFDRHEELFSRKPHKVIDATGRLQDMICRKHDKELEMFCITDQQCICVWCKESEHKNHNT
VSTAAQRTEKQKQLKETQMKIRQRIQQRQKDLHQLREDVESHKRSAHTAVEDSEKIFTEI
IRSIERSRSEATQRIRDQEKTAVSRAEGRLERLEQEINDLRRRDAELEQLSHTQDHIQFL
QSFQSLSAPPESTDEPDVPFGSLSSFDGVRESVRQLRDKLEDFCKEEIKKISDGVTFTNM
NPKTRNDFLQYSHQLTLDLNTVNKHLRLSERNRVITNTRTEQPYPDHPDRFHVYHQVLCR
ESVCGRCYWEIEWSGDNVCMSVSYKSISRKGRGYECWFGCNDQSWSLSCSSSSYTFRHNN
IRTPLPVKPIGRRIGVCVDHSAGTLSFYSVSDTMSLIHTVQTTFTQPLYPGFRVYPGSVK
LC
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagccagaatttctcaggatgagttcatgtgttcagtgtgtctggatctcctg
acggagccagtgactattccctgtggacacagttactgtaagatctgtattacagactgc
tgggatcaggaggatgagaagagcgtctacagctgccctcagtgcagacagaccttcagt
ccaagacctgctttagctaaaaacaccattctggctgaactggtggagaaactgaagaag
actaaactccctgctgactgttacgctggagctggagacgtggagtgtgacgtctgtact
ggaagaaaacacaaagccgtcaagtcctgtctggtgtgtcaggagtcttactgtcaaact
cattttgaccgtcatgaggaacttttctctcgtaaaccacacaaagtgattgatgccact
ggacgactgcaggacatgatctgccgtaaacatgataaagagctagaaatgttctgtatc
actgatcaacagtgcatctgtgtgtggtgtaaagagagtgaacataaaaaccacaacact
gtatcaactgcagcacagaggacagagaaacagaaacagctgaaggagacgcagatgaag
atccgtcagagaatccagcagagacagaaagatcttcatcagctgagagaggatgtggag
tctcataagcgctctgcacacacagcagtggaggacagtgagaagatcttcactgagatc
atccgctccattgagagaagccgctctgaggcgacacagcggatcagagatcaggaaaag
actgcagtgagtcgagctgaaggacgactggagcgactggagcaggagatcaatgatctg
aggaggagagacgctgagctggagcagctttcacacacacaagatcacatccagttcctg
cagagtttccagtctctctcagctcctcctgaatctacagacgaacccgacgttcccttc
ggttctctctcctcttttgatggcgtgagagaatctgtccgtcagctgagagacaaactg
gaggatttctgcaaagaggagatcaagaagatctcagacggagtcactttcaccaacatg
aatcccaagaccaggaacgacttcctacaatattcccatcagctcactctggatctgaac
acagtgaataaacacctccgtctgtctgagaggaacagagttattactaacactcgcaca
gagcagccgtatcctgatcatccagatagatttcatgtgtatcatcaggtgttgtgtaga
gagagtgtgtgtggacgctgttactgggagattgagtggagtggagataatgtgtgtatg
tcagtgtcatataagagcatcagcaggaagggacggggttatgagtgttggtttggatgt
aatgatcagtcctggagtttgtcctgctcttcctccagttacacatttagacacaataac
atacgcactcctctccctgtaaagcccatcggcagaagaataggagtgtgtgtggatcac
agtgcaggaactctgtccttctacagcgtctctgacacaatgagcctcatccacacagtc
cagaccacattcactcagccgctctatcctgggtttagggtttatcctggatcagtgaaa
ctgtgttga
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