Pimephales promelas (fathead minnow): 120489916
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Entry
120489916 CDS
T08155
Symbol
smarce1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120489916 (smarce1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120489916 (smarce1)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120489916 (smarce1)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120489916 (smarce1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120489916 (smarce1)
PBAF complex
120489916 (smarce1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
GCN5L1
Pcf11_helical
Sarcoglycan_2
DUF447_C
Motif
Other DBs
NCBI-GeneID:
120489916
NCBI-ProteinID:
XP_039543091
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MSKRPPYTPAPTPAPTTQMPTTPGFVGYNPYSHLAYNNYRLGGNPSGNNRNSSGITVPKP
PKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQDYLNE
YEAEKIEYNDSLKAYHNSPAYLAYVNAKNRAEAALEEESRQRQSRLDKGEPYMSIQPAED
PDDYDDGFSMKHTAAARFQRNHRLISDILSEVVVPDVRSVVTTARMQVLKRQVQSLMVHQ
RKLEAELLQIEDRHQDKKRRFLESTDSFNNELKRLCSLKVEVDMEKLAAEMAAAEEAARR
RAEEREREAAEQVERAAQEEQQPAAVQTNANTEQTSTSETKDGEDKPTPMETETLAEASE
VSQEAEQGTPAAEGEKPAQPEPAEGATDEGTSDSTAPSETSSGPPAEPQASDNTPEERQP
AQTQ
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggccaccctatacccctgcccccaccccagcccccacaacacaaatgccc
accacccctgggtttgtggggtacaacccatacagccatctggcctacaacaactacagg
ctgggagggaaccccagcgggaacaacaggaactcctcagggatcaccgttcctaagccg
cccaaaccgcccgacaagccgctgatgccctacatgcggtatagccggaaggtaagcagg
aaggtttgggatcaagttaaagcctctaatcctgacctgaagttatgggagatcggaaag
atcatcggtggcatgtggagagacctcactgatgaggaaaaacaggactatttaaatgaa
tacgaggctgagaagatcgagtataatgactctttgaaagcctaccacaactctccagcc
tacctggcgtacgtcaacgctaagaaccgtgctgaagctgctctagaagaagagagccgg
cagagacagtcgcgcctagacaagggcgaaccctacatgagcatccagcccgctgaggac
cctgatgactatgacgacggtttctccatgaagcatacagcggcagctcgtttccagagg
aatcaccggctcatcagcgacatcctgagtgaggttgtggtgcctgatgttcgctcagtg
gtgaccaccgctcgcatgcaggtgctcaaacgtcaagtccagtcgctcatggtgcaccag
aggaagcttgaagcagagctgcttcaaatcgaggaccgacatcaggataagaagaggagg
ttcctggagagcacagactccttcaataacgagctcaaacggctgtgtagtctgaaagtg
gaggtggacatggagaagctggcagctgaaatggcggctgcagaggaggcggctcgccgg
agggcggaggagagagagcgggaagcagcagagcaggtggagagagccgctcaagaagag
caacagccagctgcggttcagaccaacgccaacacggaacagacctccaccagcgagacc
aaggatggagaggacaagcccaccccaatggagacggagactctggctgaagcttctgaa
gtatctcaggaggctgagcaaggcaccccagctgcagagggagagaaaccagcccagcct
gagcctgcagagggtgctacagatgagggcaccagcgacagcaccgctccgtctgagacc
agctccggacccccagcagaaccccaggcctcggacaacacccctgaggagcggcagccc
gcccaaacccaataa
DBGET
integrated database retrieval system
