Pimephales promelas (fathead minnow): 120493180
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Entry
120493180 CDS
T08155
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pprm01002
]
120493180 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120493180 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120493180 (usp13)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120493180 (usp13)
Peptidases and inhibitors [BR:
pprm01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120493180 (usp13)
Ubiquitin system [BR:
pprm04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120493180 (usp13)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120493180 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UCH_1
Motif
Other DBs
NCBI-GeneID:
120493180
NCBI-ProteinID:
XP_039547622
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MATDLGELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCLNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKQKATGAAGGAIPRRRNGKVFLDLELNRDFNGDDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAILNAQSPYKKQESDSWEEEIQVSKHARSLRQQE
NGVRIPPSGWKCAKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALDHYKETNFPLAVK
LNTITPDGADVYSFDEEEAVLDPHISEHLLHFGIDMLQMQRTENGHHTDNHVQLRVSDWE
VIQEAGLKLKPVYGSGYTGIKNLGNSCYLSTTMQVLFSIPEFQRAYVGNLQRIFDYSPLD
PSQDFNTQMAKFGHGLLSGQYSKPPIKSELIEQVMKEEYKQLQRGISPKMFKALVSKGHP
EFSSNRQQDAHEFFLHLINLVERNNSGSENPSDVFRFIVEERVQCCQTQKVRYTQRVDYI
MQLPAPLEAASNREELITYESKRMEAEENMRPPPEPVRARIPFTACLQAFTEPENVPDFW
SSALQAKSAGVKTSRFTSFPEYMVVQIKKFTFGVDWVPKKLDISVDVPDFLDLNRLRATG
LQAGEEELPDLTPPIVIPEDTRDISTNNSLESPEIDESSVMQLAEMGFPLEACRKAVYYT
GNMGPEMAFNWIIAHMEEPDFAEPLAIPAYMEPDLLSPSLPTTSALDNQPPEESISILTS
MGFPRHHTIKALKATNNNLERALDWIFTHPDCEDESEAMSDTPDTEPNDNSFSNANAHSE
SSLSPDQDLSSPRVRDGPGRYELFAFISHMGTSTMSGHYVCHIKKEGRWLIYNDHKVCLS
ERPPKDLGYMYFYRRLSSC
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggctacagatctaggagagctactggtcccgtacatgcccaccattagagtaccgagg
acaggagacagggttttcaagagtgaatgcgctttttcctacgactctcctgaatcggaa
ggaggtctatatgtgtgtttgaacacattcctgggatttggaagagaacacgtggagaga
cattaccgtaaaactggacagagtgtgtacatgcacttaaaacggcatgtgaaacagaaa
gccacaggtgctgcagggggtgccataccaagaagaaggaatggaaaagtatttttagat
ttagagcttaaccgtgattttaatggagatgattatgagtacgaagatgaagccaagctt
gtcatatttccagaccactttgagatccctttaccaaatattgaggagttacccgcactg
gtgacaatagcctgtgatgccatcctcaatgcacagtctccatacaaaaagcaggagtca
gattcatgggaagaggagatccaagtatctaaacatgcccgaagtctcagacagcaggag
aatggtgttcgaattcctcccagcggctggaagtgcgccaagtgtgaaatgagagaaaac
ctgtggctaaacctgacggatggctctgtcctctgtgggaaatggttttttgatgggagt
ggagggaacggacatgcccttgatcactacaaagaaaccaacttccccctggcagtgaaa
ctcaacacaatcaccccagatggagcagatgtttattccttcgacgaagaagaagcagtg
cttgatcctcacatatctgaacatttgttacactttggaatagatatgctgcaaatgcaa
aggacagagaatggtcatcatacagataaccatgtgcagttgcgcgtgagtgactgggaa
gtgattcaggaggctggtctaaagctaaagcccgtctatggctcaggatatacgggcatc
aaaaaccttggcaacagctgctacctgagcaccactatgcaagtgcttttcagtattcca
gagttccagagagcgtatgttgggaacctacagagaatatttgactactcgccccttgat
ccaagccaggatttcaacacacagatggcaaaatttggtcatggacttctctcaggccag
tactcaaaacctccaataaaatcagaactaattgaacaggtgatgaaagaagaatacaag
cagctgcaaagagggatttcacctaagatgttcaaagcgctggtcagtaaaggacatcca
gagttttcctcaaaccggcaacaagacgctcacgaattcttcctgcatttaattaatctc
gtggagaggaacaattcaggctcagagaaccccagcgatgtgtttcgcttcattgttgag
gagcgagtacagtgctgtcagacacagaaagtgcggtacacacagcgagtggactacatt
atgcagcttcctgcgcccctggaggctgccagcaacagagaagagctaataacatatgag
agtaagcggatggaagctgaggagaacatgcggccccctccagagccggtgagagcacga
atccccttcactgcctgtctgcaagccttcactgagcctgagaacgttccagacttctgg
agctctgcgctgcaagccaagtcggctggagttaagacttctcgtttcacatctttccca
gagtacatggttgtgcagataaagaagttcacatttggtgttgattgggtgcccaaaaag
ttagatatttctgtagatgtacctgatttcctggacttgaatcgcctccgggctacaggg
ctacaggcaggagaagaggaactgcctgaccttacacctcccattgtcattcctgaagac
accagagacatttcaacaaacaactctttggaatctccagaaatagatgaatcatccgtg
atgcaactggcagagatgggtttccctctggaagcctgtcggaaagcggtgtactacact
gggaatatggggccagagatggcctttaactggataatagcgcacatggaagagccagac
tttgccgagcctctggcaattcctgcttacatggaaccagatctgctcagccccagcctc
cctactaccagtgcgctggacaaccagcctccagaagagagcatctccatcctcacctcc
atgggcttccccagacatcacacaatcaaggctctcaaagccacgaacaacaatttggag
cgagctcttgactggatattcacacacccagactgtgaggatgagagtgaggctatgtca
gacacaccagacacagagccgaacgataacagcttctcaaacgccaatgctcacagcgaa
tcctcactgtctccagatcaggacctgtccagcccccgtgtcagagacggacccgggcgt
tacgaattgtttgccttcatcagtcacatgggaacatccacaatgtctggtcattatgtg
tgtcatatcaaaaaagagggcagatggttgatttacaatgaccacaaagtatgtttatca
gagagaccccctaaagacttgggctacatgtacttttaccggcgcctgtcaagctgctag
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