Pimephales promelas (fathead minnow): 120493426
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Entry
120493426 CDS
T08155
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120493426 (ddx1)
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120493426 (ddx1)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120493426 (ddx1)
Spliceosome [BR:
pprm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120493426 (ddx1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120493426 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
120493426
NCBI-ProteinID:
XP_039547952
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAYGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQLEGKKGRSAVKAGGAVFNKWQMNPYDRSSAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSSAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDVDKGQLSFSKNGNDLGLAFEIPQHLKNQPFFASCVLKNAELKF
NFGDEPLKNKPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPKALIIEPSKELAE
QTLNNVNQFKKHVDNPKLRELLIIGGVAAKEQLSVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKNDRLWEKLGKSHIRTDEVHAKDDTRPGAN
TAEMWSEAIKILKGEYTIRAIKEHKMDQAIIFCRTKIDCDNMEEHFIKQGGGPDKKGHQL
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKGHVDILAPTVQELANLER
EAQTSFLQLSYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttatggcgaaatgggagtaatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacattcaggccgaatccatcccgttgattctgggtggagga
gacgtgcttatggctgctgagactggtagtggaaaaactggagcattcagtattccagtc
atccaaatagtctatgagacccttaaagaccagctggaggggaagaagggacgcagtgct
gtgaaggcaggaggagcagtgttcaataaatggcagatgaacccttatgacagaagttca
gcatttgctattggtcctgatggcctgtgctgtcagagcagagagttcaaagaatggcat
ggctgtcgttcaaccaaaggagtcacaaaagggaagtattattatgaagtgacctgtcac
gatcaagggctgtgtagggtgggctggtcttctgcgcaggcatcactggacttgggaacg
gataaatatggatttggcttcgggggaactggaaagaaatctcacaataagcagtttgac
agttatggagaggaattcacgatgcacgacaccatcggatgctacatagatgtggataaa
ggccaattgtcattctctaaaaatggtaatgatctgggattggcttttgagattcctcag
cacctgaaaaaccagcccttctttgcgtcctgtgtgctgaagaatgctgaactgaaattc
aactttggtgacgaacctttaaaaaacaaacccaaagatggatatgttgccctaaaccag
gcttcagatggtcatgtggtcaaatcgagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttcgaacgcccccaaagctctcatcattgagccgtctaaagagctggctgaa
caaaccctcaataatgtcaatcagttcaagaaacatgttgacaatcccaaactaagggaa
cttctgataatcggaggagtggctgctaaagaacagctctccgttttagaaagcggggtt
gacatagtggttgggaccccaggaagactggatgatctcatatccacaggaaagctggat
ctatcccaagtccgcttcctggtgctggatgagtgtgatggacttctctcagctggctac
acagactttatcatgagggtctacaatcagatccctcaggtgacctcagacggcaagaga
ctacaggtgatagtttgctctgccacgctgcactcattcgatgtaaagaagctctcagag
aagatcatgcatttccctacatgggtggatctgaagggagaagattcggtaccagaaacg
gtccatcacgtggtggtgccagtcaaccctaaaaatgacaggctttgggagaaactggga
aagagccacatcaggacggatgaagttcatgccaaggatgacacacgacctggagccaac
accgcagagatgtggtcagaggccattaagattctgaagggagagtacacgatcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagatcgactgcgac
aatatggaggagcacttcatcaagcagggaggaggtccagacaagaaagggcaccagtta
tcttgcgtctgtcttcatggtgaccggaaaccaaatgagcgcaaatataacttggagcga
ttcaagaaacaggaagtgaagtttctgatttgcacagatgtggctgctagaggaatcgat
atccgtggtgttccttatgtgataaacgtgactctgccagatgagaagcagaactatgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatccctggttgca
atggagaaagagaaagtgtggtaccacgtttgtgccagcagagggaaaggctgctacaac
accagactcaaagagaacggaggatgcactatttggtacaacgagaaagagttgttgtca
gaaatcgaggagcatctgaaatgcaccattactcagtgtgaacctgacatcaaagtacct
gttgatgaatttgatggcaaagtgacgtacgggcagcgcagggctacgggcggtggtctc
tataagggccatgtggatatattggccccgaccgtacaggaactggccaacctggagaga
gaggcgcaaacttccttccttcaactcagctatctacccaaccagctctttaaagcattc
tag
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