Pimephales promelas (fathead minnow): 120493471
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Entry
120493471 CDS
T08155
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120493471 (chd6)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120493471 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
120493471
NCBI-ProteinID:
XP_039548020
LinkDB
All DBs
Position
Unknown
AA seq
2956 aa
AA seq
DB search
MNPARAFDHRRRHQDQEKMKIQKKDKQMSAAHVLKHTPSAAASNASDQNAQTTFPIGHLG
KEQLRIIGGPPNHCMTHTKAGSAASSHSLRPSSINSEEDDGGGGTRVKKKRRKKDKTESE
WNKDGESNAKPKRRVQKEGKEMLPRKSKTVKEQKDHKREAKGQKEVKKVKKGQDVKVKPQ
PKNTATHPPSKRGRKPKEQGAMPPEKKKKGKRKSEAILEMVESDDTASLSTLATGGEEST
DPMDNTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRIAAMSSSTLAWQAEEPPE
DEANIIEKILAVRTVKKETSPDEAPEELEEFYVKYRNFSYLHCKWATLEELEKDPRIQQK
IKRFRNKQAQMKHIFTEPDEDLFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKWCSLSY
EESTWELQEDVDPVKIREFEDLKKIPEIKLVERPLPEQWQKLEKSREYRNGNQLREYQLE
GMNWLLFNWYNRKNCILADEMGLGKTIQSITFLFEIFFMGLRGPFLIIAPLSTITNWERE
FRTWTEMNVIVYHGSQISRQMILQYETYYRDEQGNIMTGQFKFHGVITTFEMIMADCPEL
KKINWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPS
QFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQ
KKYYRAILEKNFTFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFRKTYS
SDALDFQLQAMIQAAGKLVLIDKLLPKLLSGGHKVLVFSQMVRCLDILEDYLIQRRYTYE
RIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL
QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQL
TKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQTEGKGSTFAKASFV
SSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELME
FSELDSDSEERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLSE
RDMEVLCRALLVYCVRHYKGDDKIKSFIWDLITPTKDGHNQTLQNHSGLSAPVPRGRKGK
KLKNQLSPPELKNADWLVHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVLGEA
ANQALEEIPASKLEVTLPDIDYIEIPTIWWDSEADKSLLIGVHKHGYERYNAMRADPALC
FLERVGMPDVTALTVEQSGAETASDAPDGISKSDEIKEENDMKSEELEEKVEIKEEPMSE
ETGKNDTTVAGGFVNSLAGDLITEMMEQGRIQWPAGSALTARLRRLITAYQRYTRREPLR
HDFLLHDGIAPVTWQIGEFRHCTTEPDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEK
KIFDWGQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGSVDPSLFVEPITEE
RAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLLIGVAKHGL
SRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDANLGHCQSPQPPEYHH
TPSPHTPTQLVHTHGHHQPTEVVASEPGSSLGIGSGNREGFLDCPPLDDSLELGSLQHEG
LTSDTLHSKSGKEAFNGFPFNSATGGLNMLNSYGVQGELNGAQGDMADSIAGKLRSDVLV
GEQGSSEETGLMAPSVELDELQTPWESSDHVETSDMFNETDPILGAQALEPSFLDPPQPD
DGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGEASVDQTDLSSSLPDYVPP
PLGLPDVSLDQADPISEDQEDKLSDSNITQGVPSPGEGAESMGFHFEKEDLSPDSLKTKD
SQDEIDKMPSIESPRENCLEECQKGDCKVTFDDSNEGDLEESYEKPLREPEKVPLEESYD
LTCDETLQEPCEGFQQDSAEQQMVEEPSEEACKEPPEPIEECNLTNTTLSTDYPLPPSLP
SSPTTLPDTSASPVLDVVPKQEFLMDPVVSDVKPEPDSTTQTPHLEQTEVLDVKDKIKDE
DAKTSGLLGDVDAPRFALPMCEMGDSVHEIREPTIAQLLQEKALFSFSEWPKDRVIINRI
DSICHTILKGKWPSSSQQYESPSALANTCMPSSAHQRAGFLTTRMPISQSLNFNLPHTVP
HLPKERLVAPAFLSELKRPRRGFEFEAEVLAKPSHLGEKIQVGTSHRANALLLNGWQDAA
IDLSKPSELTVGGDSGPISHMSHTVQSTPHKITGIGSIQGSLGLDMAGILQAGLIHPVTG
QIVNGSLRRDDSMLRRRRGRRRNVETPDLGFMKGRAMNLPEQQCGSESISQPVVSSTSSQ
SECPPSTPTTLPTLPPANSPAPPPSSETLNVSVDRETANKGLMEWLRQNPNYNMELSAFP
SSQNANMLHSFLERPKQRRHRCKDPTKLDVSSLTGEERVPVVHRNTGRRLGGAMAPAIKE
LSRWLDANSEYSVAPDWADVVKHSGFLPEGKFARILTGPVCRDPGPRRRGRRPRSEMPKA
PELPAGMAPLFMNGGLIGSMDLVSLPNLRNVPGIPLTGIMGFPHGFATAVTSGDDAKNGL
GMLPMMLHGMAAVQPPMYSAHMSGMMSQSLSTATSTMSTVTASTTASVTTNSATVTSTSS
PPESSDTALQRDNTSSPMSTETWIKEETKQGGEEKKVSASVSTAAPTSSSSSSCITSTGS
HLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGSPKRKRKKVREEGLAEGNG
NGGVQMDGEESKGVKVEQTPERKSQEGVMEEDGHLVKDSHDHIRDPSEDKSTEEKEKNKT
GEEPEQDSQGPCDGGD
NT seq
8871 nt
NT seq
+upstream
nt +downstream
nt
atgaatccagcgcgtgctttcgatcacagacgcagacaccaagatcaagaaaaaatgaaa
atacaaaagaaggacaagcagatgtctgccgcccatgtactaaagcacactccatccgct
gctgcctcgaatgcctctgaccaaaacgcacaaactacatttcccatcggccacttgggc
aaagaacagttacggattattggagggccgcccaatcattgcatgactcacacaaaggct
gggtctgcggccagcagtcacagtctccgcccttcatcaatcaacagcgaggaggatgat
ggagggggtgggaccagggtgaagaagaaacgaaggaaaaaagacaagaccgagtcagag
tggaacaaagatggagagagcaacgctaaaccaaagagaagggtgcaaaaagaagggaag
gagatgcttccgagaaagtcaaagacggtgaaggaacaaaaggatcataagagggaggcg
aaaggtcaaaaggaggtcaaaaaggtcaagaaaggtcaagatgtgaaagtgaaaccacag
cccaagaacactgcaacacatccgccctccaaaagagggaggaagccaaaagagcagggt
gccatgcctccggagaagaagaagaagggaaagaggaaaagtgaggctatacttgagatg
gtggagagtgatgacacagcctctctcagcacgctcgccaccggcggtgaggaaagcacc
gaccctatggataacactaaaaggcgatcagggcgtcaagtgaagcggcggaagtacaac
gaagatcttgatttcaaggtcgtggatgatgacggggagaccattgccgtgttgggcgcg
ggccgaattgctgccatgtcttcctctactctcgcctggcaggctgaggaaccccctgaa
gatgaggctaatattattgagaaaatactcgctgtgcgaacggtcaagaaagagacatcc
cctgatgaagcaccagaagagttggaggagttttacgtcaagtacagaaatttctcctat
ctgcactgtaaatgggcgaccttggaggaactggaaaaggacccacgcattcaacaaaaa
atcaagcgcttcagaaacaagcaggcacaaatgaagcacattttcacagagccggatgaa
gacctttttaatccagattatattgaggttgatcgggttttagagatcgctatcaccact
gatacagaaacaggagaggaagttacccactacctggtgaaatggtgctcactgtcatat
gaggagagtacttgggagcttcaggaagatgttgaccctgtgaaaatccgagagtttgaa
gacctcaagaaaattccagaaattaaacttgtggaaaggcctctaccagaacagtggcaa
aaactggagaagtccagagaatacaggaatgggaaccagctcagagaataccaattagag
ggaatgaactggcttcttttcaactggtacaacaggaaaaactgtattctggctgatgag
atggggctggggaagaccatccagtccatcacgttcctctttgagattttcttcatgggt
ctgagaggacccttcctcatcatcgccccgctctccaccatcaccaactgggagagggaa
ttccgcacatggactgaaatgaacgtcattgtctatcacggcagccagatcagtcggcag
atgatcctgcagtatgagacgtactacagagatgaacagggaaacatcatgactggtcag
tttaagtttcatggcgtgatcactacatttgaaatgattatggctgactgtccggagctg
aagaagataaactggcgctgtgtggtgattgacgaggcccatcgcctaaaaaaccgcaac
tgtaaactgctggagggactcaaactcatgaacctggaacataaagttcttctcacagga
actcctttgcagaactccgttgaggaactcttcagtcttcttaactttctcgaaccctca
cagttcccttccgagaccacgttcctggaggagttcggagacctaaagacagaggagcag
gtaaagaaactgcaagccattctgaagcccatgatgttgaggagactgaaggatgatgtg
gagaagaatctggcccctaaagaggagacaatcatcgaggtggagctaactaacattcag
aagaaatactaccgtgccattctggagaaaaactttaccttccttgccaagggagcgaac
cagcacaacatgcccaacctcatcaacacaatgatggagcttcgcaagtgctgcaatcac
ccgtacctcattacaggtgctgaagaaaagattcttgagagcttcaggaaaacctacagt
tctgacgctctggattttcagctgcaggcaatgattcaggccgctggtaaactagtactt
atcgacaagttactgcccaaactgctatccggaggacataaagtgctggtgttttcccag
atggttcgatgccttgatatactggaggactacctcattcagaggagatatacatacgaa
cggattgatgggagagttagagggaatctaaggcaggctgccatcgatcgcttcagcaag
gtggactctgaccgcttcgtgttcctcctctgtacacgagcaggaggtctgggcatcaac
ctcaccgccgccgacacctgcatcatattcgactcagactggaacccgcagaacgacttg
caggctcaagctcgctgccatcggatcggtcaaagcaaagcggtgaaagtgtatcgactt
atcacgagaaactcgtacgagagggagatgtttgacaaggccagtctgaaactgggattg
gacaaggctgttctgcaggacatcaaccgcaagggcagcctcaatggggttcaacaactg
accaagatggaggtcgaagatcttctcaggaagggggcgtacggggcgctcatggacgag
gaagatgagggctctaaattttgcgaggaggatattgatcagatcctgcagcgccgcaca
cagaccatcacaatccagactgaggggaagggatcaacttttgccaaggctagctttgtg
tcttcagggaaccgtacagacatctctctggatgatccaaacttctggcaaaagtgggcc
aaaattgctgaactggaaattgactccaaggcagaaaaggagagtctggtgatcgacact
cctcgcgtaaggaagcagacgcgccactataactcatttgaggacgatgaactgatggag
ttctctgaactggacagcgactcagaggaacgaccctgtcgcacaagacgtctcagtgat
cgcaacagacgctacctccgagcagagtgcttcagagtggagaaaaaccttcttattttt
gggtggggtcgctggaaggatattctcaatcatgggcgttttaaatggcacctgtcggag
cgagacatggaggtgctgtgcagggctcttctggtctactgtgttcgccattataaagga
gacgacaaaattaaaagcttcatctgggatctgattacacccactaaagatgggcataat
caaacactgcaaaaccactcaggtctgtctgctcctgtcccgcgtggtcggaaaggaaag
aaactgaagaaccagttgagtccacctgagctgaagaatgctgactggctggtccactgt
aacccagaggtcgtgcttcaggacgacagctacaagaaacatctcaaacaacattgcaac
aaggtgctactgagggtgcggatgctgtactatctgaaggttgaagtgctgggggaggct
gctaatcaggctcttgaagagatcccagccagtaaactggaggtaaccctgcctgatatc
gactacattgagatccctactatttggtgggattctgaggcggataaatcgctgcttatt
ggagttcacaaacatgggtatgagcggtataacgccatgcgtgcagaccctgctctgtgc
ttcctggagcgggtgggtatgcctgatgtcactgcactgacggtagaacaaagtggagca
gaaactgcttcagatgcacctgatggtatcagcaaaagtgatgaaattaaagaggaaaat
gacatgaagtctgaggaattagaagagaaagtagagatcaaggaggagcccatgtcagag
gaaacggggaaaaacgacactacagtggcagggggcttcgtaaattctctcgcaggagac
ctaattacagagatgatggaacaggggcggatacagtggccggcaggctcggctcttaca
gcacgtttacgccgcctcattactgcgtatcagcgttacacacgccgtgagccacttcgt
catgatttcctcttacacgatggaattgcacctgtgacgtggcaaattggagagtttagg
cactgcacaactgagcctgacccactctttttggagtggcaacgaaggtggacgcgtcgt
gagcaggctgacttctatcgcacagtgtcttcgtttggagtagtgtatgatccagaaaag
aaaatctttgactggggccagttccgtgcccttgctcgattggagaggaagaccgacgaa
agcttggagagatatttccacagctttgtttcaatgtgtcgcactgcatgtagactgccc
cctagaaaagatgaaggttcagttgatccttcgctgtttgtggaacccattacagaagag
cgagctgcccgaacattataccgtattgagcttttgagaaaggtccgtgagcaagtattg
cggcacccactcctgggggcacgactgcaactttgtcgccctagtttgtacttacccgtc
tggtgggagtgcggcaagcatgatcgtgatcttctcatcggtgttgctaagcatggcttg
agtcgaactgacttctacatcctcaatgacccacaactatccttcctggaggcccatcgg
aactatgttcataaagaaaaccacagatatccagtcccaggcttgcctcaccatcattgc
tgcttgtatgatgccaaccttggacattgtcaatccccacaacctccggagtatcaccac
acaccttcaccccacacaccaacacaacttgtccatactcatgggcatcaccagcccaca
gaagtggtagcgtcagagccaggaagttccctgggaataggttcaggaaacagggaaggg
tttttggactgccctccattagatgactcactggagttggggtctttacaacatgaaggt
ttgacatccgacacactacatagcaaatctgggaaagaggccttcaatggattcccgttc
aattctgcaactggtgggctgaatatgctaaattcgtatggtgtgcagggggagctaaat
ggggctcaaggagatatggcggactccatagctgggaaacttcgcagcgatgttctggtg
ggagagcaagggtcctcggaggagactggattaatggctccttctgtggaactcgatgaa
cttcaaactccatgggaaagctcagaccatgttgaaacctctgacatgttcaacgagact
gatcccattttgggagcacaagctttggaaccaagctttttggatcctcctcaaccagac
gatggacgggagggtgatgaaacactaaccgactgtttgagcatgcccagttcggactct
caaagcaaccctgtcgagccactggcaccaagctttatgttgttcaaagaccttaatgtt
ggagaggcatctgtggatcagacagatttgtcgtccagtcttccagattatgttccacca
cctcttggtctcccggatgttagtcttgaccaggcagatcccattagtgaggatcaagag
gacaagcttagtgattccaacatcacacagggtgttcccagtccaggagaaggtgctgaa
agcatggggttccattttgagaaagaagacctttctccagacagtctgaagactaaggat
tctcaagacgaaattgacaagatgccttcaatagagtctccaagggaaaattgtcttgag
gaatgccaaaaaggggactgcaaggtgacatttgacgattccaatgaaggagacttggaa
gaatcttacgagaagcctctaagagagccagaaaaagtgcctttggaggagtcttatgat
ctgacttgcgacgagaccctgcaggaaccttgtgaagggtttcagcaagactcagcggaa
cagcaaatggtggaagaaccctctgaagaagcctgcaaagaaccaccagagccaatagaa
gagtgcaatctaactaacactaccctctcaacagattaccctttgcctccttcactccca
tcatctccaactaccttacctgacacctctgcatctccggtccttgatgtagtccctaaa
caagagttcctcatggatccagtggtgtcagatgtgaagcctgagccagacagcactacg
cagacccctcacctcgagcagactgaggttttggatgtaaaggacaagataaaagacgaa
gatgcgaagacatcaggattattgggagatgttgatgcaccacgctttgcgctgcccatg
tgcgagatgggagacagtgtccatgaaataagggaaccaaccattgctcagcttttacag
gagaaagcactcttctccttctcagagtggcctaaggacagagtgatcatcaaccgtatt
gacagtatctgccatactatcttaaaggggaagtggccttcctctagtcaacagtatgag
tctccctctgcattggctaacacctgcatgcctagcagtgcccaccagagggcaggattt
ctgactaccagaatgcctatatctcagagccttaacttcaacctcccacatacagtaccc
cacttaccaaaggagcggttagttgccccggcatttctctctgagctcaaacgtcccagg
cgtgggtttgaatttgaggcagaagttcttgccaaaccaagccatcttggagaaaagatc
caggttggcacgtctcatcgtgctaacgctcttctccttaatggttggcaggatgctgct
attgacctctccaaaccatctgaactaacagttggtggagacagtgggccaatcagtcat
atgagccacactgtccagtcaacgccccacaaaataaccgggataggctccatacaaggc
tcactgggattggatatggctggcattttgcaggctggcttaattcatcctgtcacaggg
cagattgtcaacggtagtcttcgtcgggatgattcaatgttgagacggagaagaggacga
agaagaaatgtagagactcctgatctcggctttatgaagggacgagccatgaacttgcct
gaacaacagtgtgggtcagagagcatcagccagcctgttgtgtcctcaacatcctctcag
tcagaatgccctccatccaccccgactacacttcctactctccctccagcaaactctcca
gctcctcctccatcctcagagactctgaatgtgagcgtggacagggaaacggccaataaa
ggcctaatggaatggctccgacaaaaccccaactacaacatggagctgtctgcttttcca
tcgtctcagaatgcgaacatgttgcacagtttcttggagcgtccaaagcaaagaagacat
cgctgcaaagatcccaccaagctcgacgtcagctctctaactggagaggagagggtccct
gtagtgcacagaaacacaggccgcaggcttggaggcgctatggctccagccattaaagag
ctctctcgatggctggatgcaaattccgaatactctgtggctcctgattgggcagatgtg
gtgaagcattcgggttttctaccggagggcaaattcgcacgcatcctcaccggacctgtg
tgtcgggatcccggtccacgccgaagaggcagacgaccccgcagcgagatgcccaaagcc
cccgagctccccgctggcatggctccgctcttcatgaacggtgggctcattggcagcatg
gacctggttagtttacccaatctccgcaatgtccctgggatcccactcaccggtatcatg
ggctttcctcatggtttcgccacggctgtaacatcaggagacgatgccaagaatggtctc
ggcatgttgcccatgatgctccatggcatggcggccgtgcagccgcccatgtatagcgct
cacatgagtgggatgatgagtcagtcgctttccacggcgacatccactatgtccaccgta
actgcatccacgacagcgagcgtgactacgaactccgcaaccgtaacctcaacctcaagc
ccgccggaaagttcggacaccgcacttcagcgggataacacgagctctccgatgagcacg
gagacctggattaaggaggaaacgaagcaaggaggagaagagaaaaaagtgtccgcttcg
gtgtctacagctgcgcccactagcagcagtagtagtagttgcatcacaagcaccggcagc
catttgacctttaacccctttctaatcccgggaatgtcacatagtctgttgtatccgcat
atgttcttgccgccaggcagtataatggcactgcccgcgatgcctgcagcagacagcacg
ggcagccctaagaggaagaggaagaaggtcagagaggaaggactcgcggagggaaacggg
aacggtggcgtgcagatggacggcgaggaatcgaagggggttaaagtcgaacagacgccc
gaacgaaagagccaagagggtgtaatggaggaagatggacatctggtcaaagattctcat
gaccatatacgagatccttccgaggataaaagtactgaagaaaaggaaaaaaacaaaacg
ggagaagaacctgagcaagattctcaaggcccgtgtgacggcggagactag
DBGET
integrated database retrieval system
