Pimephales promelas (fathead minnow): 120495316 Help Entry 120495316         CDS       T08155                                  Symbol lig1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm03030   DNA replication pprm03410   Base excision repair pprm03420   Nucleotide excision repair pprm03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pprm00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     120495316 (lig1)    03410 Base excision repair     120495316 (lig1)    03420 Nucleotide excision repair     120495316 (lig1)    03430 Mismatch repair     120495316 (lig1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pprm03032]     120495316 (lig1)    03400 DNA repair and recombination proteins [BR:pprm03400]     120495316 (lig1) Enzymes [BR:pprm01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      120495316 (lig1)     6.5.1.6  DNA ligase (ATP or NAD+)      120495316 (lig1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      120495316 (lig1) DNA replication proteins [BR:pprm03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     120495316 (lig1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      120495316 (lig1) DNA repair and recombination proteins [BR:pprm03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      120495316 (lig1)    NER (nucleotide excision repair)     Other NER factors      120495316 (lig1)    MMR (mismatch excision repair)     Other MMR factors      120495316 (lig1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Hamartin Motif Other DBs NCBI-GeneID:  120495316 NCBI-ProteinID:  XP_039550748 LinkDB All DBs Position Unknown AA seq 1016 aa AA seqDB search MISDDARLIPLHFLFHWSFFQPMKGKDKSDGQVKVKAEPVKSPLKIQNGVQESDSPVKKV HKRSRAIIDSDDEDEPLVKEQVPKQSEVQTVKPEKISDVTTASSTPVTPKTPKTPTTPVT SSASVAVVTPASSGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGSKEEEEEEKE EVGGQESKRARVEESLEQTENEMMEVEEKSADGKTVVEERKDEDEVKTSKVVDNANNEMK ENDKDDKQKKKINEENKKKENDKNDEQKKKINEENKKKEKLEDKKEKEDSSPERLEKKER DAEDEGGSAKKKPISSFFAPRKAAVKLEKEERNVGEKKKNGEIPDVAEQKGNKSEKGVES PMESQYDPSRAPYHPIEHACWSRGQKVPYLAVARTFEKIEDDSGRLKNIETLSNFLRSVI LLTPDDLLCCVYLCLNQLGPAYQGLELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLG LVAESSRSNQRMMFKPSILTAVGVFNKLKEIANMSGNSVMNKKIDIIKGLFVACRFSEAR YIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQEFPPAVLDAGKGKSSENKKVWLEEKA LILKQTYCEMPNYDAIIPVLLKDGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDE ASFTCEYKYDGERAQVHILENGDVRIFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDS EAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRA LLRESFEEKEGEFVFARSLDADDTETIAEFLEQSVRDSCEGLMVKTLDKHATYEIAKRSH NWLKLKKDYLEGVGDTLDLCVIGAYLGKGKRTGSYGGFLLACYDEENEEFQSVCKIGTGF KDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMG LVDPEKGISLRFPRFLRIRDDKKAEDATTGSQIAGLYNKQQQIQNQGDKPDLEDYY NT seq 3051 nt NT seq  +upstreamnt  +downstreamnt atgatatctgatgatgcgaggctcatcccactccacttcctctttcactggtcattcttt cagccaatgaaaggcaaggataagagtgatggacaggtcaaagtaaaggctgaacctgtt aaaagtcccctcaaaattcagaatggcgtgcaggaaagtgattcacccgtaaagaaggtt cataaacgtagtcgagcaatcatagacagtgatgatgaagatgagccgctggttaaagaa caagtgccaaaacagagtgaagttcaaacggtaaaaccagagaagatttctgatgttaca acggcttcttccactcctgttactccaaaaactcccaaaaccccaacaactccggtcact tccagtgcctctgttgctgtcgtaacccctgcttcctcaggcactccagcaactccaaca tcaacatcaccgtcaggcattcccaaacggaaaacagcccgtaagcagttccccaaaagg aagctggaaagcaggagcgatggagaggggtcaaaagaggaggaggaggaggagaaagag gaagttggaggccaggagagtaagagagcgcgagtggaggaatcacttgagcagacagag aatgagatgatggaggtggaagagaagagtgcggatggaaagacagtagtggaggaacgg aaagatgaggatgaagtaaagacgagtaaagttgtggacaatgcaaacaatgagatgaaa gagaatgataaagatgataagcagaagaaaaagataaatgaagagaataagaaaaaagag aatgataaaaatgatgagcagaagaaaaagataaatgaagagaataagaagaaagaaaaa ttagaagacaagaaagagaaggaagatagcagtcctgaacgattagagaaaaaagagaga gacgcagaagacgaggggggatcggccaaaaagaaacccatcagcagcttttttgcaccc agaaaggcagctgtaaaactggaaaaggaggagcgcaatgtgggagagaaaaagaagaat ggagaaatccctgatgtcgctgaacagaaagggaataaaagtgaaaagggggtggagtct cccatggagagccagtatgatccctccagagcaccgtaccatcccattgaacatgcctgc tggagcaggggccaaaaagtgccatatttggctgttgctcgcacatttgaaaagattgaa gatgattcgggaaggctgaaaaacattgaaactctttccaactttttgcgctctgtaatt cttcttactccagatgacctgttatgttgtgtatacctgtgtctgaaccagctcggccct gcgtatcagggtctggagctgggcatcggggagactgtcctgatgaaagccgtcgctcaa gcaaccggccgacagttggacaaaatcaaggcggaggctcaggagaaaggtgacctggga ttggttgctgagagttcccgcagcaatcagagaatgatgtttaaaccgtccattctgacc gcagtgggtgttttcaacaaactgaaagagattgctaacatgagtggaaactctgtaatg aataagaagattgacattattaaagggttgtttgtggcgtgtcggttttccgaggcccga tacattgtgcggtcattggcggggaagctgcggatcggattggctgagcagagtgttctc gctgctctcagtcaggctgtgtgtctgacgcccccgggccaagagttcccaccagctgtg ctggatgcagggaaaggaaagagttcagaaaacaagaaagtgtggctggaggaaaaagca ctgatcctgaaacagacatactgtgagatgcccaattatgatgcaatcattcctgtattg ctgaaggatggcatagatgaactgcccaatcactgcaagctcaccccaggtgtgcccctg cgacccatgttagctcacccaactaaaggggtcggtgaggtaatgaaacgttttgatgag gcatctttcacctgcgaatataaatacgatggagagagggcacaggtccatattcttgag aatggagatgtacgcatttttagccgaaaccaagaggacaacacaagcaaataccctgat attatctcaagaatccctcaggtgaaaaaggagaatgtacggtcctgtgttttggattca gaggcggtggcctgggacagagaaaagaaacagattcagccgtttcaggtcctcaccacg aggaagaggaaggatgttgatgcatctgagatcaaggttcaagtgtgtgtctacgccttt gaccttctgtacctcaacggagagtctctggtacgagagcctctaagcaaacgcagggct cttttacgggagagttttgaggagaaagaaggagagtttgtttttgctcgatccctggat gctgacgacacggaaaccatcgctgagttcttggagcagtctgtacgagattcttgtgag ggtctaatggtgaaaacattggacaaacatgcaacttatgaaattgccaaacgctcacac aattggctcaagctgaagaaggactatctggagggtgttggagacacattggatctgtgt gtgattggtgcttatctggggaaagggaagagaacaggcagctatggaggatttctacta gcctgttatgatgaggagaatgaggagttccagtctgtctgcaagattggaacaggcttc aaagatgaagatctggagcagcattacaatttcttaaaggagcacattttacctaaacca cggccgtattaccgcgtggaccaatcagcagagccggatgtctggctagatgcagtgcaa gtgtgggaggtgaaatgcgctgatctttcactgtctccagtctataaggcagcgatggga ttggtggacccagagaaaggcatttcactccgtttcccaagattcctgaggattagagat gacaaaaaagcagaggatgccaccacaggatcacagattgctggactctacaacaaacag cagcagattcaaaatcagggtgacaaaccagatttggaggactactattga

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