Pimephales promelas (fathead minnow): 120495323
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Entry
120495323 CDS
T08155
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120495323 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120495323 (lig4)
Enzymes [BR:
pprm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120495323 (lig4)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120495323 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120495323
NCBI-ProteinID:
XP_039550763
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MDGASSDATPQTSVAAQVPFIHLCTVLEKIQKTKLRPDKSKILKEFIDSWRNFHAALHKD
NSNTTDSFYAAMRLFVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLLNYRAPT
TSQGETGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVAVNNASKRKDQVKKSLLHLIT
QSSALEQKWLIRMILKDMKLGISKETILQVFHPDASELYNVTTDLNKLCLQLHDPSVSLS
EVSIELFSAFKPMLAAVANIRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRNSY
EYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKKLMD
DSDLQTCFCVFDVLLVNNQKFGNEPLKKRYDTLETVFTPIKGRIQLVSKSDGKTMQEVVN
FLNEAIDNLEEGIMIKDPMSIYKPDKRGDGWLKIKPEYVDGLMDELDLLIVGGYWGKGRR
SGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYNLGLKLAKHWKVFNKNNPPA
AILCGTEKPEVYIEPRNSVILQVKAAEIVSSEMYKTNCTLRFPRIERIREDKEWHQCMTL
TELSQFRSRASGKLASRHLHIQEDQPEKKKRKFIAKPKTTIGVISHFKSQDLSAVAKETD
MFEDVEFCVINGNDVHSKAELEKGVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLVSSDQ
HDVVWAAWLLECLENKQVIPWQPRHMIHMSPSTRDHFSKEYDQYGDSYYVDTDEQQLMEV
FERIVPTEAKCPSVAKIEAENAWDDLPTSIFRPYSAYFDRCADFEDPKSIIRGTCLDARA
LEFRFHGGKVVEELKEGISHVIVEGERRALDLKTLRRLFTKKFKIVRQSWVTDSIKAGHV
EDEIDYLI
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggatggagcctcaagtgatgccacaccacagacttctgttgctgcacaagttccgttc
atacacctctgcacagttctggagaagattcaaaagaccaaactccgaccagacaaaagc
aaaatccttaaggagtttatagattcatggaggaattttcacgcagcccttcacaaggac
aattccaacaccacagattccttttatgcagcaatgcgtctctttgtgcctcaatttgaa
cgagagcgaatggcttacggtataaaagagaacatgcttgccaaactgtatattgaggtt
ctaggcttacctaaaaatggacctgaggcaaacaaacttctaaattacagagctccaacc
acatctcaaggagaaacaggtgactttgcccttacggcctactttgtcctgaaaaaaagg
tgtacaagtcaggggaatttaagcattaaggaagtcaacgacttcttggattctgtagcg
gtcaacaatgccagcaaacggaaggatcaagtgaagaaaagccttttgcatctgattact
cagagctcagctttggaacagaagtggctcattcgaatgatcctcaaggatatgaaactt
ggcattagcaaggagacaattcttcaggtttttcatccagatgcatcagaactctacaat
gtcaccacagatcttaataaattgtgcctacaacttcatgatccatctgtgtcccttagt
gaggtctccattgagctgttttctgcatttaaaccaatgctggctgctgtcgccaacatc
agacagatagagaagcaaatgggcaaccggccattctatattgagacaaagctcgatggt
gaacgcattcagctgcacaaagctggggatgtttacaaatactatacaaggaactcttat
gagtacacacaacagtttggggcctctccactagagggctccctcacaccatacatacac
aatgtcttcaaacctcatgtggtgaactgcatactggatggagagatgatggcttataac
cctacaactgagaccttcatgcaaaaaggcagtaagtttgatattaaaaagctgatggat
gactctgatttgcaaacctgcttttgtgtatttgatgttttgttagtgaacaatcagaag
tttggaaacgaacctctcaagaagcgttatgatactcttgagactgtcttcacccccatc
aaaggccgtatccagctggtcagtaaatctgatggcaaaaccatgcaagaagtagtgaat
ttcctcaatgaagccattgacaatctggaagagggtataatgattaaggatcccatgtcc
atctacaaaccagataaacgtggtgatggatggctgaaaattaagcctgaatatgtggac
ggtctgatggatgaactcgatctgctgatagtgggaggctactggggtaaaggccggaga
agcgggatgctctctcattttctctgtgcggtagcagaggtgccaagtcctggggagaag
cccacagtattccacaccctctgccgcattggatcaggctacactttgaaagaactgtac
aatcttggtctgaagttagccaaacattggaaagttttcaacaaaaataatcctccagca
gccatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactcagtgatc
ctacaagtcaaagcagcagagatcgtttccagtgaaatgtataaaaccaactgcacattg
cgtttcccccgaatagaaagaatcagagaagacaaagagtggcatcagtgcatgaccttg
accgaactgagccagttccgctccagggcttctggaaagctggcatctagacatctgcat
atccaagaggaccagcctgaaaaaaagaagcgcaaattcatagccaagcccaagacgaca
atcggagtcattagccactttaaatcccaggatttatcagcagttgccaaagagacggat
atgtttgaagatgttgagttttgtgtgataaatggtaatgatgtacattccaaggcagag
cttgagaaaggtgtggcccgttgcggagggattgtggtgcaaaaccctggaaaagacaca
tactgtgtgatagcagctgtccagaacatgagagtgaagaacctcgtctcttcagaccag
catgatgtggtgtgggctgcttggcttctggagtgtctggaaaataagcaggttatacca
tggcaaccacgtcacatgatccatatgtcaccctccacaagggaccacttctctaaagag
tatgatcagtatggagacagttattacgttgacactgatgaacagcagctgatggaagtc
tttgaaaggattgtccccacagaagctaaatgtccttctgtggctaagatagaagcagag
aatgcctgggatgacttgcccactagcatttttaggccttacagtgcgtactttgaccga
tgtgctgactttgaagatccaaaatccattatccgtggtacatgtttggacgctcgtgcc
ttggaattccgattccatggtggtaaagttgtggaagaactgaaagaaggaatctcgcat
gtcatcgtagaaggtgagagaagagctctggacttaaaaacactgaggcgactttttact
aagaagttcaaaattgttcggcaatcttgggtgactgattccatcaaagcaggccatgta
gaggatgagatcgactacctaatataa
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integrated database retrieval system
