Pseudomonas protegens Cab57: PPC_2144
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Entry
PPC_2144 CDS
T03613
Symbol
ligD_1
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PPC_2144 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_2144 (ligD_1)
Enzymes [BR:
ppro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PPC_2144 (ligD_1)
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PPC_2144 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BAO61491
LinkDB
All DBs
Position
complement(2355116..2355676)
Genome browser
AA seq
186 aa
AA seq
DB search
MKPSLNAKEHEKDPDLPMQRPRQYCIQKHYASHLHYDFRLELDGSLKSWAIPKGPSLDPR
VRRLAVHVEDHSLDYLCFEGSIPAGQYGAGDVIVWDYGVWLPEGDPQKSYAKGQLYFRLK
GEKLSGMWRLFRTRLAGKKEQWLLTKSNDSEARPESEYDILIEKPGSVADVCVAGRKYRK
ENIETP
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtcactgaatgcaaaggagcatgagaaagaccctgacctcccaatgcaacgt
ccccgccaatattgcatacagaaacactatgccagtcacctccactatgactttcgttta
gagcttgatggatcgctaaaaagctgggcaatccccaaaggaccatcactggacccaaga
gtgcgacgactggcagtgcacgtagaagatcattcgctggattacctatgctttgaaggg
agcatccccgcggggcagtacggggctggtgatgtcatcgtttgggattacggggtttgg
cttcccgaaggtgatccacaaaaaagctacgcaaaaggacagctgtattttcgcttaaaa
ggagaaaaactatccggcatgtggaggttgttccgcacccgtctcgctggaaaaaaagaa
cagtggcttctaacgaaatcaaacgacagtgaagcccgcccggaaagtgaatatgacatt
ctgattgagaagcccggtagcgtggccgacgtgtgcgtcgcaggcaggaagtaccgcaaa
gagaatatagagacaccctga
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