Podospora pseudoanserina: QC764_0087640
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Entry
QC764_0087640 CDS
T09816
Name
(RefSeq) hypothetical protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03013
Nucleocytoplasmic transport
ppsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
QC764_0087640
03015 mRNA surveillance pathway
QC764_0087640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_0087640
Enzymes [BR:
ppsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
QC764_0087640
5.6.2.5 RNA 5'-3' helicase
QC764_0087640
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
QC764_0087640
mRNA cycle factors
Common to processing body (P body) and stress granule
QC764_0087640
BRITE hierarchy
Motif
Pfam:
AAA_12
AAA_11
Viral_helicase1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
87961605
NCBI-ProteinID:
XP_062799830
LinkDB
All DBs
Position
5:complement(4683323..4684271)
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AA seq
303 aa
AA seq
DB search
MAGIELNTLHSRAETTKAKRRVKTAKIVFSTCIGSSLGLLRNEMFDIVIIDEASQQTEGC
ALVPFVKGCQRAVLVGDHVQLRPTVRPEVVALGGDCSLFKRLFTSSRGEGLGRLMLDTQY
RMHSSLCDFPSTEFYRERLVTGLRDSERGLEKTGFSWPKGDKRRVWVEFADREEVKGKSK
VNKGQAGVCLGVCTLLTTAAYGEKGVSQTVAVSTPYAKQVDLLKRVLGQVMGSGLVEVSS
VDAFQGREADVVVFVTVRCNEKREIGFLTDMRRLNVALTRTRRGLFARAGAIPSQVQARQ
TGK
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggccggaatcgaactcaacaccctccactctcgcgccgagaccaccaaagccaaaaga
cgtgtgaagactgccaaaatcgtgttttcgacttgtataggctcaagtttgggactatta
aggaatgaaatgtttgatattgtcatcatagacgaagcctcccagcaaacagaggggtgc
gccctcgtgccgttcgtaaaggggtgtcaaagggctgttttggtgggtgatcacgtccaa
ctaagaccgacggtgaggccagaggttgtggctctggggggtgattgttccctttttaag
aggctgttcacctcttccagaggggaggggttagggaggttgatgctcgacacgcaatac
cggatgcacagctcgttatgtgacttcccttctacagagttttaccgagagaggttggtt
accggattgagggacagtgagagggggttggaaaagacgggattttcgtggccaaagggg
gataaaaggagggtgtgggttgagtttgctgatcgggaggaggtgaaggggaaaagtaaa
gtaaataaagggcaggcgggggtttgtttgggggtttgtacgcttttgactactgctgct
tatggggaaaagggggtcagccagactgtggcggtttcaacaccgtatgcgaagcaagtt
gatttgctgaaacgggtgttgggtcaggttatggggtcggggctggtggaggtgagcagt
gttgatgcttttcaggggagggaggcggacgtggttgtttttgtgacggtgaggtgtaat
gagaagagggagattgggttcttgacggatatgaggaggttgaatgtcgcgcttacgagg
accaggaggggattgtttgcacgggcgggtgccatacccagccaggttcaggctaggcaa
accgggaagtga
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