KEGG   Podospora pseudoanserina: QC764_0087640
Entry
QC764_0087640     CDS       T09816                                 
Name
(RefSeq) hypothetical protein
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
ppsa  Podospora pseudoanserina
Pathway
ppsa03013  Nucleocytoplasmic transport
ppsa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ppsa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    QC764_0087640
   03015 mRNA surveillance pathway
    QC764_0087640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppsa03019]
    QC764_0087640
Enzymes [BR:ppsa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     QC764_0087640
    5.6.2.5  RNA 5'-3' helicase
     QC764_0087640
Messenger RNA biogenesis [BR:ppsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     QC764_0087640
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     QC764_0087640
Motif
Pfam: AAA_12 AAA_11 Viral_helicase1 UvrD_C_2 AAA_30
Other DBs
NCBI-GeneID: 87961605
NCBI-ProteinID: XP_062799830
LinkDB
Position
5:complement(4683323..4684271)
AA seq 303 aa
MAGIELNTLHSRAETTKAKRRVKTAKIVFSTCIGSSLGLLRNEMFDIVIIDEASQQTEGC
ALVPFVKGCQRAVLVGDHVQLRPTVRPEVVALGGDCSLFKRLFTSSRGEGLGRLMLDTQY
RMHSSLCDFPSTEFYRERLVTGLRDSERGLEKTGFSWPKGDKRRVWVEFADREEVKGKSK
VNKGQAGVCLGVCTLLTTAAYGEKGVSQTVAVSTPYAKQVDLLKRVLGQVMGSGLVEVSS
VDAFQGREADVVVFVTVRCNEKREIGFLTDMRRLNVALTRTRRGLFARAGAIPSQVQARQ
TGK
NT seq 912 nt   +upstreamnt  +downstreamnt
atggccggaatcgaactcaacaccctccactctcgcgccgagaccaccaaagccaaaaga
cgtgtgaagactgccaaaatcgtgttttcgacttgtataggctcaagtttgggactatta
aggaatgaaatgtttgatattgtcatcatagacgaagcctcccagcaaacagaggggtgc
gccctcgtgccgttcgtaaaggggtgtcaaagggctgttttggtgggtgatcacgtccaa
ctaagaccgacggtgaggccagaggttgtggctctggggggtgattgttccctttttaag
aggctgttcacctcttccagaggggaggggttagggaggttgatgctcgacacgcaatac
cggatgcacagctcgttatgtgacttcccttctacagagttttaccgagagaggttggtt
accggattgagggacagtgagagggggttggaaaagacgggattttcgtggccaaagggg
gataaaaggagggtgtgggttgagtttgctgatcgggaggaggtgaaggggaaaagtaaa
gtaaataaagggcaggcgggggtttgtttgggggtttgtacgcttttgactactgctgct
tatggggaaaagggggtcagccagactgtggcggtttcaacaccgtatgcgaagcaagtt
gatttgctgaaacgggtgttgggtcaggttatggggtcggggctggtggaggtgagcagt
gttgatgcttttcaggggagggaggcggacgtggttgtttttgtgacggtgaggtgtaat
gagaagagggagattgggttcttgacggatatgaggaggttgaatgtcgcgcttacgagg
accaggaggggattgtttgcacgggcgggtgccatacccagccaggttcaggctaggcaa
accgggaagtga

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