Paenibacillus psychroresistens: EHS13_15370
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Entry
EHS13_15370 CDS
T06328
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EHS13_15370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_15370
Enzymes [BR:
ppsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHS13_15370
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EHS13_15370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QGQ96156
UniProt:
A0A6B8RL57
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All DBs
Position
3463247..3464131
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AA seq
294 aa
AA seq
DB search
MAVAIKETITIEGQDITLSNPNKLLWPELGITKLQYMQKLIILAPYLLPYCQNRYLTTIR
YPNGIDGKSFYQKNIPPTAPAFVNSAQKDSIHYVILDSLSTLLWLGNLAALEFHTSFEYV
GGEEPAEWILDIDPSEEDEPRLMEAIAIIGDTLNSLGINSIPKTSGATGVQIIIPIKRGH
TFEQLRRIGHFLGRFLTEKYPDLFTIERLIKNRGSKIYIDYVQHSAGKSLSAPYTPRARK
LATVSTPLLWTEVKQNVDLRTFNLFTIEDRLKKHGDLITKVAKQDLSAILRGIK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgcaatcaaagaaaccataaccatagaaggacaagatataactctatccaat
ccaaacaagctgctctggccggagttaggcattactaagctgcaatatatgcaaaagctg
attatcctagctccttatctactgccttactgtcaaaatcgctatttaacgacgattcgt
tatccgaatgggattgacggcaaatcattttatcagaagaacatcccacccacagcacct
gctttcgtaaactcagcccaaaaagacagcatacattatgttattctagattccttatcg
actcttctatggttagggaatttagctgcgcttgagttccatacgtcattcgaatatgtg
ggcggagaagaaccagcagagtggattctggacattgacccaagtgaggaagacgagccg
agactgatggaggccatcgctattattggcgatacgcttaattcattggggattaattca
ataccaaaaacctcgggcgcaacaggggttcaaattatcatcccgataaagagggggcat
acttttgagcaattacgcagaattggtcattttttaggccgatttttgactgaaaaatac
cccgatctattcacaatcgaaagattgattaagaatcggggcagcaaaatttatattgat
tatgtacagcattctgcagggaaaagcctttctgccccttatacgcctcgcgctagaaag
cttgcgaccgtatctacaccgcttttatggacagaagttaagcagaatgtagatcttcgc
acgtttaatttgtttaccatagaagatcgcttgaaaaaacatggagatttaattactaag
gttgcaaaacaagatctaagcgccattctaagggggataaaataa
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