Podospora pseudocomata: QC762_308890
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Entry
QC762_308890 CDS
T09797
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03022
Basal transcription factors
ppsd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
QC762_308890
09124 Replication and repair
03420 Nucleotide excision repair
QC762_308890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsd03021
]
QC762_308890
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_308890
Transcription machinery [BR:
ppsd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
QC762_308890
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
QC762_308890
BRITE hierarchy
Motif
Pfam:
Ssl1
C1_4
VWA_2
zinc_ribbon_15
Tfb4
Motif
Other DBs
NCBI-GeneID:
87909090
NCBI-ProteinID:
XP_062745140
LinkDB
All DBs
Position
3:3163969..3168696
Genome browser
AA seq
501 aa
AA seq
DB search
MADSDDEYVGDLSGDDAGVDSVYGTRSKDGGKGKGGQKGKGTRKAAWEEVHRAWDEVAIA
EDGSITVAELIEAEKRRRLMRDTTPIQRGIIRHMVLVLDMSIAMAEKDLLPNRFALTFSY
AMEFVNTFFQQNPISQLGIIGMRDGIAVRISDMSGNPVEHIEKLRQWALKDPIGNPSLQN
ALEMCRGHLYHTPSHGTREVLIIYGALLSSDPGDISDTITSLIADRIRVSIIGLAAQVAI
CAELCARTNDNDDSQYRIALHEQHFRELFLAATTPPVTHEAEQSNASLLMMGFPSRSLAS
KDFVSLCACHNKPTREGYTCTRCRIKVCRLPASCPVCGLTLILSIHLARSYHHLFPLKSW
VAVPWTEAKKSVACFSCQTPFPPVPKAAPPKIKLKVKESSGVGGQTAANIAKAKGRGEVP
AKTNTVTAPTPGLLPEAIKAGVSESGRYKCPVCEEHFCIDCDIYAHETIHNCPGCLARLV
KSQQQQQEEVVGAGEAMEVDS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccgacgacgaatatgtcggggacctctctggtgacgatgccggagtcgac
agcgtctacggtacacgatcgaaagatggcggaaaaggaaaaggtggccagaagggcaag
ggaacccgcaaagcagcctgggaagaagtccaccgagcctgggacgaggttgccattgcc
gaagatggcagcatcacagtggccgagttgatcgaggccgagaaacgccggcggttgatg
cgggataccacaccgatccagcgtggaataatacggcacatggtgttggtgttggacatg
agcatcgcgatggcagagaaggacctgcttccgaaccgcttcgccctcaccttctcctac
gctatggaatttgtgaacacattctttcagcagaatccaatcagtcagctggggatcatc
gggatgcgcgatggtattgccgtcaggatcagcgacatgagtgggaacccagtcgagcac
attgagaagctgaggcagtgggcgcttaaggaccctattgggaacccaagtcttcaaaat
gccctcgaaatgtgtcgaggtcacttataccacaccccctcccacggcacccgcgaagtc
ctcatcatctacggcgccctcctctcctcggacccaggcgacatctccgacaccatcacc
tccctcattgccgaccgcatccgcgtctccatcatcggcctcgccgcccaggtagccatc
tgcgccgagctctgcgcccgcacaaacgacaacgacgactcccaataccgcatcgccctc
cacgagcagcactttcgcgagctcttcctcgccgccacgacaccccccgtcacccacgag
gcagagcaatcaaacgcctccctcctcatgatgggcttcccctcccgctccctcgcatca
aaagattttgtctccctctgcgcctgccacaacaaaccaacaagagaagggtacacctgc
acgaggtgtagaatcaaagtctgccggttacccgcgtcttgtcccgtttgcggactgacg
ctgatattgtccattcacctggcgagatcgtatcaccacctttttcccctcaaatcatgg
gtggcggttccgtggacagaagcaaagaagtcggtggcgtgtttttcctgccagacgccc
ttcccgcctgtcccgaaggctgcgccgccaaagatcaagttgaaggtgaaggagtcttcc
ggtgttggggggcagacagcagccaatatcgccaaggcaaaaggcagaggggaggtgcct
gcaaagacgaatactgtaacggcaccgacgccagggttgttgccagaggcgatcaaggcc
ggggtgagcgagagcgggaggtataaatgtccagtgtgtgaggagcatttttgcattgat
tgcgatatttatgcccacgagacgattcataattgtccggggtgtttggcgaggctggtg
aagagtcagcagcaacaacaggaggaagtagtaggggcaggggaggcgatggaggtggat
tcatga
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