Pseudomonas pseudoalcaligenes: BN5_1392
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Entry
BN5_1392 CDS
T03772
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppse
Pseudomonas pseudoalcaligenes
Pathway
ppse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN5_1392 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_1392 (mfd)
Enzymes [BR:
ppse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN5_1392 (mfd)
DNA repair and recombination proteins [BR:
ppse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN5_1392 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDM39993
UniProt:
W6QVH9
LinkDB
All DBs
Position
complement(1489077..1492514)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPANAGKQQWGNLPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPNLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLSRGILVVPIATALHRLAPK
RFLLGSSLVLDVGQTLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDKPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVADFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEETDTLFDYLPGDTQVFSLPGIEKAAEQFWTDARS
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEPGIGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPREVEGWPAFVAS
PERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRADMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGEAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMESNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCASELAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIDRADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIAGAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
SRLILYKRIANASDEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQADKLGISKVDAG
PQGGRIEFAAQTCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALFER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctgccggccaacgccggcaaacagcaatggggcaac
ttgcccggtgctgccctgtccctggccatcgccgaagcagccagcaatgccgggcgattc
accctagttctgaccgagggcagccagagcgcggaacgcctgcaggaagagctggccttc
tttgccccgaacctgcccgtattgcattttcccgactgggaaaccctgccctacgacgtg
ttctcgccacaccaggacatcatttcccaacgcatcgcggccctttaccagctgccgcaa
ctgagccgtggcattctcgtagtgcccatcgccacggccctacaccgcctggcgccgaaa
cgctttctgctcggcagcagcctggtgctggatgtcggccagacgcttgatgtggaacag
atgcgcacgcgcctggaagctgccggctatcgctgcgtggatacggtgtacgagcacgga
gagttcgccgtacgcggcgcattgatcgatctgttcccgatgggcagcgacaagccctac
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgacccggaaacccag
cgctcggtggacaaggtagagtcgatccgtctgttgccggcgcgtgaatttccgctggaa
aagaaggctgtcgccgatttccgcgggcgtttccgcgagcgcttcgacgtggatttccgg
cgctgcccgatctatcaggacctttccaccggtatcacccccgccggcatcgagtactac
ctgccgctgttcttcgaagagacagacactctgttcgactacctgccaggcgacacccag
gtgttctccctgcccggcatcgaaaaggctgccgagcaattttggacagatgcgcgtagc
cgctatgaggatcgccgagtcgatccagagcgaccattgctaccgcctgccgacatcttc
ctgccggtggaggactgtttcgcccgcctgaagagctggccgcgggtggtggtcaatcag
gacgatatcgagcccggcatcggccagacccgcttcgacgcgcgcgccctgcccgacctg
gcaattcaggccaaggccggcgagccgctggcggcgttgcgccgctttatcgaagaatat
ccaggccgcgtgctgttctgcgccgaatcagccggtcgccgcgaagtactgctggaactg
ctcgcccgcctcaagctcaagccccgggaagtcgagggctggccggccttcgtcgccagc
cctgaacgcctcaacatctgcattgcaccactggatgaaggcctgctgctcgacgacctg
gcactgatcgccgaaagcccgctgttcggccagcgcgtgatgcagcgtcgccgccgcgaa
aaaggccgagaaggcggcgataacgtgatcaagaacctcaccgagctgcgcgaaggcgcg
ccggtggtgcatattgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggccgccgaattcctcgccctgcaatatgccgacgaagccaagctttatgtc
cccgtggccagcctgcacctgatcgcccgctacaccggcagtgacgatgccctggcaccg
ctgcatcgccttggttcggaggtctggcagaaggccaagcgcaaggctgccgaacaggtg
cgcgatgttgccgccgagctgctcgatatctacgcccgccgcgctgctcgcgaaggtttc
gccttccaggacccggcactggattacgccaccttcagcgccggtttccccttcgaggaa
accccggaccagcaggccgccatcgatgccgtgcgcgccgacatgctggctggcaagccg
atggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtcgccgtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtaaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcggcgaggccgtgcagcaactggccgaa
ggcaaggtggatatcgtcatcggcacgcacaagctgctgcaggatgacgtcaagttccac
aacctcggcctggtgataatcgacgaggaacaccgcttcggcgtgcgccagaaggaacag
ctcaaggcgctgcgcagcgaggtcgacatcctcaccctgactgccacgccgatcccgcgc
acgctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacgccaccagcg
cggcgtctgtcggtgcgcaccttcgtcatggaaagcaacaagccgaccatcaaggaagcg
ctgctgcgcgagctgctgcgcggtggccaggtctactacctgcacaacgatgtgaagacc
atcgagaagtgcgccagcgagctggccgagctggtgcccgaggcacgtatcggcatcggt
cacggacagatgcgcgaacgcgatctcgagcaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgaaaccggcatcgacgtgcccagcgccaac
accatcatcatcgaccgcgccgacaagttcggcctggcgcaattgcaccagttgcgtggc
cgtgtcggccgcagccaccaccaggcctacgcctacctgctgacgccaccgcgcaagcag
atgaccccggatgcggaaaaacgcctggaggccatcgccggcgctcaggacctcggcgcc
ggcttcgtcctcgctacccatgacctggaaatccgcggcgctggcgaactgcttggcgac
ggccaaagcgggcagattcaggcggtcggcttcaccctctacatggaaatgctcgaacgc
gcggtcaaggccatccagaaaggcgagcagccgaacctcgaccagccattgggcggcggc
ccggagatcaacctgcgtgtaccggcgctgatccccgaggactacctgcccgacgttcac
agccgcctgatcctctacaaacgcatcgccaacgccagcgacgaggacggcctgaaggag
cttcaggtagaaatgatcgaccgtttcggcctgctgccggagccgaccaagaaccttatg
cgcctgaccctgctcaagctgcaggccgacaagctcggcatcagcaaggtcgacgccggc
ccgcagggtggacgaatcgagttcgctgcgcaaacctgcgtcgacccgctgaccctgatc
aaactgatccaggcccagccaaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgccgatggagcgtgcggaagaacgcttcaacaccctggaagccctgttcgagcgc
ctcgcgcccaccacctga
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integrated database retrieval system
