Parasedimentitalea psychrophila: QPJ95_20590
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Entry
QPJ95_20590 CDS
T09434
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QPJ95_20590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppso03400
]
QPJ95_20590 (mfd)
Enzymes [BR:
ppso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QPJ95_20590 (mfd)
DNA repair and recombination proteins [BR:
ppso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QPJ95_20590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_16
SecA_DEAD
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WIY24868
UniProt:
A0A9Y2KY79
LinkDB
All DBs
Position
complement(4259113..4262571)
Genome browser
AA seq
1152 aa
AA seq
DB search
MVQRVITMGGAPEGYDARLVLNEVEKSGGPVLHVARDDKRMEAMRAALAFYAPDMPVFVF
PGWDCLPYDRVSPNADIAATRMATLAALVHQMPTAFVLLTTLNGATQRVPGRAVLQEAAF
SAQVGRRINEKALRNFLVRMGFTQSPTVMEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDV
LDGARRFDPASQRTIEKLDLIELAPVSEVILDEAAITRFRQNYRIEFGAAGADDPLYEAV
SAGRKHQGIEHWLPFFHAKLETLFDYLPQATVSLDHQMTPARLARWDSIEDQYENRKIAM
QAKGRMDTVYKPIPPGLLYLDDAAWEQALGTQRVIQLHPLPQANGPGVVDAGGRIGRNFS
PERQMETISLFTSLADHIKAKLQDGPVVVASYSEGARERLTGLIEDEGLSEIIAISNGTR
IGKSGLYLAVWALEHGFFTPEMTVISEQDVLGDRLIRAPRKRRKAENFLTETQSLGAGDL
VVHVDHGIGRFLGLEVITAAGAAHECILLQYAEDARLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPVLDPPPGSWDAFSARFPYQETDDQ
LRAIGDVIDDLTSGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAIVAPTTLLARQH
YASFAERFRGFPLEVRQLSRFVSAKDAQATRDGMSRGVVDIVIGTHALLAKSIRFRDLGL
LIIDEEQHFGVSHKERLKQMRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLA
IRTYVSEFDAVTIREALLREHYRGGQSFYVVPRVSDLPDIEAFLNEQMPELTYVIAHGQL
AAGDLDERMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRAKLTAAAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLHEAIAKIKSGELEGLSEADDQWAPQINLGVPVLIPEKFVPDLDVRL
GLYRRLSSLTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFISPTGLVEFIQAQDGLAKVKDNKIVVRRDWRSDGDKIKGAFAIARELAEK
VVAAKKKKKQSA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcgtgtgattaccatgggcggcgcgcccgagggttatgacgcccgtcttgtc
ctcaatgaggtcgagaaatccggcggaccggtgctgcatgttgcgcgtgacgataagcgc
atggaggcgatgcgggcggcactggcgttttatgcccccgatatgccggtctttgtgttt
cccggctgggactgtctgccctatgaccgggtgtcgccaaatgccgatattgcagcgacg
cggatggcgacgctggccgccttggtgcaccagatgcccacagcttttgtgttgctgacc
accttgaacggtgcaacccagcgggtgccggggcgggcggttttgcaagaggccgctttc
tcagcccaggtcggccgccgcattaatgaaaaagcgcttcgcaacttcctggtgcggatg
gggttcacccaaagcccaacggtcatggagccgggcgattatgcgatccgtggcggcatc
atcgatatcttccctccgggacaaagcggccccgttaggctggacctgtttggcgatgtg
ctggacggcgcccggcggtttgacccggccagccagcgcaccatagagaaactggatctg
atcgagttggcgccggtgtcagaagtgatcctagacgaggcggcgatcacccggttccgg
cagaattaccgcattgaatttggcgctgccggcgcggatgatccactgtacgaggcggtg
agtgccggccgcaaacatcagggcattgagcattggctgccatttttccatgccaagcta
gagacattgttcgactatttgccacaggcgacggtatcactggaccatcagatgacgcca
gccagacttgcccgctgggacagcatcgaagaccagtatgaaaaccgcaagatcgcaatg
caggccaagggccggatggatacggtttacaagccgatacctccggggttgctgtatctg
gatgatgccgcctgggaacaggccctcggcacccagcgggtgatccagctgcatccgttg
ccgcaggccaatgggccgggtgtggtggatgcaggcggccgaatagggcgcaacttttca
cctgaacggcaaatggaaactatcagccttttcacatcattagccgatcatattaaggca
aaactgcaagatgggccggtggtcgttgcctcctattccgaaggtgcacgagagcggctg
acagggttgatcgaagacgagggccttagtgagatcatcgcgatctcaaatggcactcga
attggcaaatccgggttgtatctggctgtctgggcgctggaacacgggtttttcactccg
gaaatgacggtgatttccgagcaggatgtgctgggagaccggttgatccgggcgcctcgc
aaacgccgaaaggcggagaatttcctgaccgaaactcagtcactgggcgcaggcgatctg
gtggttcacgtggatcacggaattggccggttcctagggctggaggtgatcaccgcagcc
ggcgccgcgcatgaatgcatcctgttgcaatatgccgaggacgccaggctgtatttgccg
gtggaaaacatcgagttgctgtcaaaatacggtcacgacgaggggctgttggatcgtttg
ggcggcggagcctggcaggccaagaaggccaagctgaaagagcgtatccgcgagatggcg
gatcggttgatccgggtagcggccgaacgcgccctgcgaaaagcgccggtgctggatccg
ccaccgggcagctgggatgcgttttcggcgcgctttccctatcaggaaaccgacgatcag
ttgcgggcgattggcgatgtcattgacgatctgacctcggggcggccaatggaccggttg
atctgtggcgatgttggatttggcaaaaccgaggtggccatgcgggcggcctttgtggct
gccatgtccggggtgcaggtggcgattgttgctccgaccacgttgttggcacgccagcac
tacgccagctttgccgaacgctttcgtggatttccgttggaagtcaggcaattgtcacgc
tttgttagcgcaaaggatgcgcaggccacacgggacgggatgtcccgcggagttgttgac
attgtcatcggcacccatgccttgctggccaaaagcatccgcttcagggaccttggtctg
ctgatcatcgacgaggaacagcactttggcgtcagtcacaaagaacgcctgaaacagatg
cgcagcgacattcatgtgctgacactgaccgcgacacccattccacgcaccttgcagctg
tcgctgtccggtgtccgcgacctgtcgatcattggcaccccgccggtggaccgtctggcg
atccgcacctacgttagcgaatttgatgctgtcaccatccgcgaggcgttgttgcgggaa
cactatcgtggcggccagagtttctacgtggttccaagggtcagcgatctgccggatatc
gaggcgttcctgaacgagcaaatgcccgaactgacctatgtgattgcccacggccaattg
gcagcgggtgatctggatgagcgcatgaatgcgttttatgacggaaaatacgacgtgctg
ctggccaccaccattgttgaaagcgggttggatatcccgaccgcaaacaccatggttgtt
caccgggccgatatgttcgggctgtcgcagctctatcagattcgtggccgggttgggcgc
tcgaaaacacgggcctacgcctatctgaccaccaagccgcgcgccaaattgaccgccgct
gcagagaaacggctgcgtgtcctggggtcgctggatacactgggggccggctttaccctg
gcctcgcaagaccttgatatcaggggcgctggcaacctgctgggagaggaacaatccggg
cagatgcgcgatgttggctatgagctgtaccagtcgatgctgcatgaggcgattgccaag
atcaaatcaggcgagttggaaggcctgtcggaagccgacgatcaatgggctccgcagatc
aaccttggcgttccggtgctgatccccgagaaatttgtgcccgatctggacgtaaggctg
ggtctgtatcgccgactgtcatccctgaccaccaaggtcgaattggaaggctttgctgca
gagctgattgaccggtttggcaagctgcccaaagaggtcaataccctgatgctggtggtg
cggatcaaggcgatgtgcaaacgggctggaattgccaagttggatggtggtccaaagggc
gcaacgatccagttccacaatgacaagttcatctcgcccaccgggctggtcgaattcatc
caggcgcaggatggcttggccaaggtcaaagacaacaaaattgtggttcgccgcgactgg
cgcagtgatggcgacaagatcaaaggggcctttgccatcgcccgggaactggccgaaaag
gttgtggccgccaagaagaaaaagaaacaatcggcctga
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