Peribacillus psychrosaccharolyticus: I6J18_22570
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Entry
I6J18_22570 CDS
T07206
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsr
Peribacillus psychrosaccharolyticus
Pathway
ppsr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6J18_22570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsr03400
]
I6J18_22570
Enzymes [BR:
ppsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6J18_22570
DNA repair and recombination proteins [BR:
ppsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6J18_22570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DUF2683
Motif
Other DBs
NCBI-ProteinID:
QQT00316
UniProt:
A0A974NM92
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All DBs
Position
complement(4471830..4473692)
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AA seq
620 aa
AA seq
DB search
MKPMLPTYRDDAPKGTDWLFEPKFDGFRAILTLSKHHISLISRNGKELLPQFPEIEAFIN
SILPNIEKELPLVFDGELVWLENPYKSNFMQMQWRGRLRNVELITKAATLSPCTLLAFDL
LQIKGKSIMDLPYVKRKSLLFGFGQKQKLPLLPEPMHDARIQLVPNSETFDFIKEQILLH
DGEGIVAKNAQSSWQEGKRTENWYKLKNWRTVTCFITALDKENKYLTCGVYKADEIVKIG
QVKNGIQPSEKEIIRTLVKNNAHSEDDRYYFMDPSLCISVHFLHAYDQDHLREPQFDRFV
LDQVPQNCTWEAFTTAQYTFPETVTVTSPDKPIWELSTQTVTKVDYLQYLRIISSWFLPF
LQNRSLTSIRYPHGVLGGERFFQKNVPEYAPDFVKTVLESDHEAILCNDLQTLLWLGNQL
AIEFHTPFQKSGKIMPDELVLDLDPPGHGHFHLAIKAALIIKGTLDTLNLSAFVKTSGNR
GLQVHIPLPADVFSYNDTRMFTEFLGDYITGAYPDDFTTERMIKKRGTRLYLDFVQHHEG
KTLIAPYSPRGNNFAGVATPLYWDELQDHIQITDYTILTVPERIRKLGCPFAEMEKARSQ
QPFGEVLAFLKQNRLKPHQN
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccaatgctgcccacctatcgagatgatgctcccaaggggacagactggcttttc
gagccgaaatttgatgggtttcgcgcgatattaaccctgtcaaaacatcatatttcttta
ataagcagaaatggaaaagaattattaccacaattccctgaaattgaagcgtttatcaac
tccatcctacctaatatagaaaaggagctgccgctcgtattcgacggggaattagtctgg
ctggaaaacccttataaatctaatttcatgcaaatgcagtggcgtggacgactgcggaat
gtcgaattaattacaaaggcagcgacactgtctccttgtacccttcttgcttttgattta
ttacagataaaaggcaaaagcatcatggatttgccttatgtaaaacgaaaaagccttctc
ttcggttttggtcaaaaacaaaagctgccattattaccagagcctatgcatgatgcaaga
atacaacttgtcccaaacagcgaaacgtttgacttcataaaagaacaaatactgcttcac
gatggagagggaattgtcgcgaaaaacgctcaaagttcttggcaagaaggtaagcgcacc
gaaaactggtataaactaaaaaactggcgaaccgtaacctgtttcatcaccgcccttgat
aaagaaaataaatatttgacgtgcggtgtctataaagctgacgaaatcgttaaaattgga
caagtaaaaaacggcatccagccttcagaaaaagaaatcatacgaacccttgttaaaaac
aatgcacattcagaagacgaccgctattacttcatggacccttctctttgtatctctgtt
cattttctgcatgcctatgatcaagatcatctacgggagcctcaattcgaccgtttcgtc
ctagatcaagttccccagaactgtacatgggaagcattcacaactgctcaatatacgttt
ccagaaaccgtaacggttacctctccagataaaccaatttgggagttatctacccaaacc
gtgaccaaagtggactatctgcaatacctacgaattatctcaagctggtttcttccgttt
cttcagaatcgttcgcttacctctatccgttatccgcatggcgtactaggcggcgaacga
tttttccaaaaaaatgtgcctgaatatgcacccgattttgtgaagaccgtgctagagtct
gatcatgaagctattctttgtaatgatcttcaaacattactctggctcggaaatcagctt
gctatcgaatttcacaccccttttcagaaatcaggaaaaataatgcctgacgaacttgta
ctagatcttgatccgcccgggcatggtcactttcatttagccatcaaagccgctctcatt
attaaaggcaccttggacacattaaatctttcagcctttgttaaaacatccggaaatcga
ggactacaggtgcatattcccttaccggcagatgttttttcatacaatgatacaagaatg
ttcaccgaatttttaggcgactacataacaggagcctatccagatgatttcacgaccgaa
cgaatgatcaaaaaaagaggcactaggctctatctcgattttgtccaacatcatgaagga
aaaacactaatagccccctattcaccacgcggcaataactttgccggtgtcgcaacaccg
ctttattgggacgaactccaagatcacatccaaattacggactacacgatccttactgtc
ccagaaagaattagaaaactcggctgcccttttgccgaaatggaaaaagcacgatcccaa
cagcctttcggagaagtcctcgcctttttaaagcaaaaccgcctcaagcctcatcagaat
taa
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