Persicobacter psychrovividus: PEPS_27140
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Entry
PEPS_27140 CDS
T09740
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppsv
Persicobacter psychrovividus
Pathway
ppsv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PEPS_27140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsv03400
]
PEPS_27140 (mfd)
Enzymes [BR:
ppsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PEPS_27140 (mfd)
DNA repair and recombination proteins [BR:
ppsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PEPS_27140 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BDD00434
LinkDB
All DBs
Position
3207331..3210690
Genome browser
AA seq
1119 aa
AA seq
DB search
MISREELLKNYTEDSLIQHIQLYLKENDRANIELKGLVGSTDALVSAAVSQLSGAPQLFI
LHDREEAAYFQNDLQSILPASQDIMLFPASFKKPYHSENTENANILLRAETLNKINDQQA
KQPIIVTYPEALTEKVISKESLEDHTFRCNIGEEVDVATLRSLLLEFGFEITDFVYEAGQ
FAIRGGIIDVFSFGNELPYRLELFGDEIDSIRTFNPETQLSVDKVASVSLIPNIKSNIEE
TEQWISLLSFLPPETLLWIKDFELLENTLDNIYAQAQEIYQEKTAAAGGTSILTPPEQLF
LNFTQFQKEFTNFSAIEFGNRFSQLAEKSFPFEIKPQPHFNKDFNLLVEDLSKHHEQHLD
CVLVADVPKQMDRLISILEELAPALPIKASPIALRAGFIDTHRNLLCYTDHQIFERFHRY
KVKQGFSKSKALTLKELRSLKTGDYVTHVDYGVGRFAGLEKVEVKGRSQESVRLIYRDND
MLFVGIHSLHKIAKYTGKEGTAPQMSKLGSSEWEKKKARVKKKVQDIAKDLIALYAKRKE
VEGYAFGEDSFMQAELESSFIYEDTPDQAKATADVKKDMEAVYPMDRLVCGDVGFGKTEV
AIRAAFKAVADGKQVAVLVPTTILAMQHHKTFVERLGNLPVRVDYINRFRTTKQIKETLA
DLKEGKVDILIGTHRIVNKDVEFKDIGLLIIDEEQKFGVKVKDKLKQFRVNVDVLTLTAT
PIPRTLHFSLMGARDLSVIGTPPPNRQPVTTEIHTFNDRVIRDAVDFELRRGGQVFFVHN
RVGDIEAIAGLIQRLVPDARISIAHGQMEGVKLEKIMTAFVEGEKDVLISTNIIESGLDI
PNANTIIINQAHMFGLSDLHQMRGRVGRSNKKAFCFLLSPPTSTLTAEARKRLSTLEEFT
DLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFELYHKILDEAVNELKQAPEYKGLFA
DQPTQAQKPAKECILETDLEIIIPEQYIANTAERLNIYSQLDKLPSEQLSEYVTNLTDRF
GPLPDAVASLIQAVKLRDHAQSLGFEKLIVKNHKMKAYLVGQENQEYFQSELFGAILAYV
GQHPKQCQIKEIKEKLLVSFEPIESIEAAYNTMKAIFCP
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgattagcagggaagaattgctaaaaaattacaccgaggacagcctcatacagcacata
caactttacctcaaagaaaatgaccgcgcgaatattgaactgaaagggcttgtcggaagt
acagacgccctggttagtgctgcggtaagtcagttatctggagcaccgcagttgtttatt
ctacacgatcgggaagaggctgcctattttcagaacgatctccaaagcatccttcctgct
tcacaggacatcatgttgtttcctgcctccttcaaaaagccgtaccattccgaaaatacc
gagaatgccaacattttattgcgtgcagaaaccctcaataagattaatgatcagcaggcc
aaacaacccattattgtaacctaccctgaagcacttactgaaaaagtgatcagcaaagaa
agcctggaagatcatacctttcggtgcaacattggcgaagaggtggacgtggcaacgctc
cgatcgctgttgcttgaatttggctttgaaattaccgattttgtttacgaagcggggcag
tttgcaatccgtgggggaatcattgatgttttctcctttgggaatgaattgccttaccgc
ctggaactttttggagatgaaatcgacagcattcggaccttcaacccagaaacacagctt
tcggtagacaaggtagcgtccgtcagcttgatcccaaatatcaaaagtaatattgaggaa
acagaacaatggatttccttactttcctttttgcctcccgaaaccctgctttggatcaaa
gattttgaactgctcgaaaataccctcgataatatttatgcacaggctcaggaaatctat
caggaaaaaaccgccgctgcagggggcacctcaatactcactcctccggagcaactgttc
ttgaatttcacgcaatttcaaaaagagtttaccaacttttcagccattgaattcggcaac
cggttcagtcagttggcagaaaaatcattcccttttgaaatcaagccacagccacacttc
aacaaagattttaacctgcttgtcgaagatctttccaagcatcacgaacaacacctcgac
tgtgtgttggttgccgatgtacccaaacagatggatcggctgatcagcattcttgaagaa
ctcgctcctgctttgcccattaaggcttctccgattgctttacgtgcaggtttcatcgat
acacaccgaaacttgctttgctataccgatcatcagattttcgaaaggttccaccgatac
aaggtcaagcaagggttctctaaatctaaagcactgaccctcaaagaacttcggagcctg
aaaaccggagattacgtaacgcatgttgattacggcgtcgggcgttttgcgggtctggaa
aaagtagaagtcaagggccgctctcaggaatccgttcgattgatctaccgtgacaatgac
atgctttttgtgggcattcactccctccacaaaattgccaaatacactggaaaagaaggg
accgccccccaaatgagcaaattgggctcgtcggaatgggagaagaaaaaagctcgggtc
aagaaaaaggtacaggatattgccaaagacctgatcgccctatatgccaaaagaaaagaa
gttgaaggttatgccttcggcgaggattctttcatgcaggccgaactcgaatcttccttt
atttatgaagacacccccgaccaggccaaagctaccgccgatgtaaaaaaagacatggag
gccgtttaccctatggacaggctcgtttgcggtgatgtaggcttcggtaaaacggaggtc
gcgatccgtgccgctttcaaggctgttgccgatggaaagcaagtcgccgtattggtaccg
accaccattttggcgatgcagcaccacaagaccttcgttgagcgattgggtaacctgccc
gtgcgggtggattacatcaacaggtttcgtaccactaagcagatcaaggaaacacttgct
gaccttaaagagggcaaggtggacatccttatcggcacccaccgcatcgttaataaagat
gttgaatttaaagacatcggcttgctgattattgacgaagagcaaaaatttggcgtgaag
gtcaaagacaagctcaaacagttccgtgtgaatgttgatgtgctgaccctgactgccaca
cctattccgagaactttgcatttctcactgatgggcgcccgggacctgagtgttatcgga
acacctccacccaaccgtcaaccagtaaccacagaaatacataccttcaacgaccgcgtt
attcgtgatgctgtagattttgaattgcgtcgtggtggccaggtattctttgttcataat
cgggtgggggatatcgaggccatagcgggactcattcaaaggcttgtgccagacgcgcgc
atcagcattgctcacgggcaaatggagggggtgaaactcgaaaaaatcatgaccgccttt
gttgaaggtgaaaaagacgtcctgatctctaccaacatcattgaatccggcctggacatt
cccaacgccaacaccatcatcatcaatcaagcacacatgtttggcctttctgacttacac
caaatgcggggaagggttggccgatcaaataaaaaagcgttttgtttcttactttctccg
ccaacaagtacactaaccgctgaggcacgtaagagattaagcactttagaagaatttaca
gacttaggcgatgggtttaaagttgctatgcgtgatttggatattcgtggtgcggggaac
ctgctcggggccgaacaaagtggtttcatcaccgatctcggctttgagctttatcataaa
attctcgacgaggcagtgaatgagcttaagcaagcacccgaatataaagggctctttgcc
gaccagcccacacaggcccaaaagcccgcgaaagagtgcatccttgaaactgatcttgag
atcattattcctgagcaatatattgccaatacagccgaaagactcaatatttacagtcag
ctggacaagctgccttcggaacaactttcggaatatgtaactaacctcactgaccgtttt
ggaccacttcccgatgccgtggcatcattgatccaagcggtaaaactccgtgaccacgca
caatcattgggctttgaaaaactgatcgttaaaaatcataaaatgaaagcctacctcgtt
ggacaggaaaatcaggagtacttccagtcagagctctttggggcaatcttggcctatgtt
ggtcagcacccaaaacaatgtcagattaaagaaataaaagaaaaattattggtcagcttt
gaacctattgagagcatagaggctgcgtataacactatgaaagcaattttttgcccctaa
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integrated database retrieval system
