Pseudomonas versuta: AOC04_03800
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Entry
AOC04_03800 CDS
T04081
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOC04_03800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_03800
Enzymes [BR:
ppsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOC04_03800
DNA repair and recombination proteins [BR:
ppsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOC04_03800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
ALE87391
LinkDB
All DBs
Position
complement(812591..816040)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPKLPATAGKQHWGNLPGAALSLAIAEAASAAQRFTLLLTADSQSAERLEQELRF
FAPELPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
RFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPVFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPGDTQVFSLPGIEQAAENFWSDVRN
RYEERRVDPSRPLLPPAELFLPVDDCFARLKNWPRVVVSQDDVDTGSSRERFPARPLPNL
AIEAKANQPLAALSGFLEQFDGRVLFTAESAGRREVLLELLERLKLRPKTVENWPDFVAS
KHRLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYQGLATLEVDNQVAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDE
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGHAFADPKADYATFSAGFP
FEETPDQQTTIEAVRADMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEINAAVAQLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNNSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAQKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAYLP
DVHTRLILYKRIANASDEEGLKDLQVEMIDRFGLLPEPTKNLVRITLLKLQAEQLGIKKV
DAGPQGGRIEFAADTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTIETL
FERLTPKSS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgaaactccctgccactgcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctcgcaatcgccgaagctgccagcgccgcccagcgcttc
accctgctcctgaccgccgacagccaaagcgccgaacgccttgagcaggagttgaggttt
ttcgcgcccgagttgccggtgctgcattttcccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgtatcgccagcctgtaccggctgccagag
ctgagtcacggggttttggtagtgccgatcacgacggccctacatcgcctggctccgacc
cgttttttgctgggcagcagcctggtgctggatatcgggcagaagctggacgtcgagcag
atgcggacccggcttgaggccagcggttatcgctgcgtcgatacggtgtatgagcacggc
gagttcgcggtacgcggtgcgctgatcgacctgttcccgatgggcagcaaactgccctac
cggatcgacctgttcgacgatgaaatcgaaaccctgcgcaccttcgacccggaaacccag
cgctcgatcgacaaggttgagtcggtacgcttgctgccggcacgcgaatttccgctgcaa
aaagacgccgtaacccgtttcaaggcgcgctttcgcgaacgctttgatgtggacttccgc
cgttgcccggtctttcaggacctgagcagcgggatcacccctgcaggtattgagtactac
ctgccgctgtttttcgatgaaacctcgaccctgttcgactacttgccgggagacacacaa
gtgttctcgctgccgggtatcgagcaagcggcggagaatttctggtctgacgtgcgcaac
cgttacgaagaacgccgcgtcgacccgtcccgcccgttgttgccgcctgccgaactgttc
ctgccggtagatgactgctttgcccggctgaaaaactggccacgggtagtggtcagccag
gacgacgttgacaccggcagcagccgcgaacgcttcccggcacggccgctgccgaatctg
gcgatcgaagccaaggccaatcagccactggcggcgttgtccgggtttttagagcagttt
gatggccgcgtgctgtttactgccgaatccgccggtcgccgcgaagtactgctcgaactg
ctggagcgtctgaaacttcgcccgaaaaccgtcgaaaactggccggatttcgtggccagt
aaacatcgactggccatcaccattgcgcccctcgatgagggcttgctgctggacgatccg
gcgctggcactgatcgccgaaagcccgctgttcgggcagcgggtgatgcagcgtcggcgt
cgcgagaaacgcgccgacgccaacaacgacgcagtgatcaaaaaccttaccgagctgcgc
gaaggcgcaccggtggtgcatatcgaccacggtgtcggccgctatcaagggctggcgacg
ctggaagtcgacaatcaggtggccgagttcctgaccctggaatacgccgagggcgccaag
ctctacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgag
ctagcgccactgcatcgcctgggctccgaaacctggcaaaaagccaagcgcaaagccgcc
gagcaagtacgagacgtggcggccgagctgctggacatctatgcgcgccgggctgcccgt
gaaggccatgcgtttgccgacccgaaggctgattacgcgaccttcagcgctggcttcccg
ttcgaggaaacgccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgttgtcg
cccaagccgatggaccgcctggtgtgtggcgacgtgggcttcggcaaaactgaagtggcc
atgcgtgccgcctttattgccgtgcatggcggccgtcaggtggcgattctggtgcccacc
accctgctcgcgcagcagcactacaacagcttccgcgaccgttttgccgactggcccgta
acggtcgaggtgatgagccgcttcaagtccgccaaagaaatcaacgctgccgtggcccag
ctggccgagggcaagatcgacatcgtgatcggcacccacaagctgctgcaggacgacgtc
aaaatcaaaaacctcggcctggtgatcatcgacgaagagcaccggttcggggtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtcgacattctgaccctcaccgcaacgcca
atccctcgcaccttgaacatggccgtgtcgggcatgcgtgatctgtcgatcattgccacg
ccgcccgcccgccgcctgtcggtgcgcaccttcgtcatggagcagaacaacagcaccgtc
aaagaggcgttgctgcgtgaattgttgcgtggcggccaggtttactacctgcacaacgat
gtcaaaaccatcgagaaatgcgccgccgaactggcagagctggtacccgaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctat
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccgggatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcacagctgcaccag
ttgcgcggccgggttggacgcagtcaccaccaggcttacgcctacctgctgacaccaccg
cgccagcaaatcactggcgacgcacaaaagcgtctggaagccatcgccaacacccaggac
ctgggtgccggttttgtgctggccaccaacgacctggaaatccgtggtgcgggcgagctg
ctcggtgacggccaaagcggccagatccaggccgtcggttttaccctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacagcccaacctcgaccagccgctg
ggcggcggaccggaaatcaacctgcgggtaccggcccttattcctgaagcctatctaccg
gatgttcacacccggctgattctctacaaacgcattgccaacgccagcgacgaagaaggt
ctcaaggatttgcaggtcgagatgatcgaccgctttggcttgctacctgaaccgaccaaa
aatctggtgcgcattaccctgctcaaattgcaggccgagcaactggggatcaaaaaggtc
gacgccggcccgcaaggtggacgcatcgaatttgccgcggacaccccggttgatccgctg
gtgctgatcaagctgattcagggccagcccaaccgttacaaattcgaaggcgccaccctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgcttcaacactattgagacgctg
tttgagcgtctgacgccgaagtcgtcctga
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