Pseudomonas versuta: AOC04_12150
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Entry
AOC04_12150 CDS
T04081
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOC04_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_12150
Enzymes [BR:
ppsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOC04_12150
DNA repair and recombination proteins [BR:
ppsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOC04_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Exo_endo_phos
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ALE88890
LinkDB
All DBs
Position
2754963..2758391
Genome browser
AA seq
1142 aa
AA seq
DB search
MHKLKIATFNVNGIAARLPNLLQWLAKERPDIVCLQELKAQDHAFPASDLEAAGYGSLHH
GQASWNGVAILARDSEPLLIHKGLPGAEDDSQSRYLEAAVHGVVVGCLYLPNGNPQPGPK
FEYKFKWFEQLIAHAETLQASKHPVVLAGDYNVVPTDIDIYNTRSWLKDALLQPQSRECY
QRLLAQGWIDSVRHLYPEERVYTFWDYFRQHWQKNSGLRIDHLLLNPVLAPFLKNAGVDA
WVRGEAHASDHAPTWIEISSRKTRSKRNTKRNAGDSHSTTQPSDTLDEYNRKRDFNATSE
PSGSAKPHKSAPKKAREPATLQFCIQKHDATRLHYDFRLELDGTLKSWAVPKGPSLDPKS
KRLAVHVEDHPLDYATFEGTIPEGHYGAGDVIVWDRGIWKPLSDPAEAYAKGRLKFELQG
EKLGGAWNLVKAHIPGKQEQWFLIKHQDEFARPESEYDIVNTEPHSVLSERTIVQKKCSG
KSADPKPVEKATAARKKPGHTQLVSARSSTLPDSLKPELATLVDCAPEGDWRYEIKFDGY
RIMAKVGDGKVQLFTRNGHDWTHKLPRQAEAIASLALESAWLDGEMVVANAQGVPDFQAL
QNAFEQGRSGNIVYYLFDLPFLNGMDLREVPLEQRREALSKVLERSEDEVLKFSDDFAET
PAALLNSACQMQMEGLIGKRVGSPYVSRRSGDWIKLKCKRRQEFVIVGFTDPKGSRSKFG
ALLLGLHDADSGELKYSGKVGTGFNQVTLATIYAQLTPLETKKPAVVNPPTGADAKDVHW
LKPSLLAEVAFAEITQEGSVRHAVFQGLRNDKPAKSITEERPAETPQIEKKPDRKKPPAA
AAKGKGGEEAATRIRLTHPQRVIDPTSSATKRDLADYYIGVSEWLLPQLLNRPVALVRAP
EGIGGELFFQKNAERLAIPGIEIIGKEETGHPVMLINNIEALIGAVQMSTIELHTWNAVS
KDLHRPDRFILDLDPDPALSWKSMVEATQLTLTVLDELGLTSFLKTSGGKGIHIVVPLTP
KADWDAVKSFSHAVVKHIANLLPDRFSAVSGPENRVGRIFIDYLRNGLGATTICAYSART
REGLPVSVPIFREELKEIKGANVWNIQNIHQRLGALGVDPWADMPGTKQTITAQMRKRIG
LK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcataaactcaagatcgctacattcaatgtcaacggaatcgcggcgcgtcttcccaat
ctgctgcaatggcttgcgaaagagcgcccggacatcgtctgcctgcaagagctgaaggca
caggatcacgcgttccctgcaagcgaccttgaagcggcgggttacggctcattgcaccat
ggccaagcctcatggaacggcgtggcgattcttgcgcgcgattccgaacccctcttgatc
cataaaggcctgcctggggctgaagacgattcgcagtctcggtacctggaagcagcggta
catggggtcgtcgtcggctgcctatacctgcccaatggaaacccgcagccagggcccaag
tttgaatacaagttcaagtggtttgagcaactgatcgcgcacgccgaaacactgcaagcc
agcaaacaccctgtggtcctcgcgggcgattacaacgtggtgcccaccgacattgatatc
tacaacacgcgttcctggctcaaggatgcgcttcttcaaccgcaaagccgcgagtgctac
caaagactcctagcccaaggctggatcgactcggtgaggcacctgtacccggaggagcgc
gtgtatacgttctgggattatttccgtcagcactggcagaagaattccggcctgcgcatt
gaccatctcctgttgaacccggtgctcgcccctttccttaaaaacgcgggcgtggatgcc
tgggtgcggggcgaagcgcatgccagtgatcatgcgccgacatggattgaaatctcatcg
cgaaagactcgatccaaaaggaacacgaagcgcaacgcgggcgactcacactcaacgacg
cagccctccgacacgctcgatgaatacaaccgaaagcgtgatttcaatgcaacctcggaa
ccgtcgggcagcgcaaaaccgcataaatctgccccgaaaaaggcccgtgaaccggctacg
ctgcagttctgcatccagaagcacgatgcgacgcgcctgcattacgactttcgcctggaa
ctcgacggcacactgaagagttgggcggtgcccaagggcccttcgctggacccgaaatcc
aaacgcctggccgtgcatgttgaagaccatcctctcgattacgcaacatttgaaggcacg
atcccggagggccattacggtgccggtgacgtcattgtgtgggatcgcggtatctggaag
ccgttatccgaccccgccgaggcctatgccaaaggccggctgaaattcgagctgcaggga
gaaaagctcggcggcgcctggaacttggtcaaggcgcatatccctggcaagcaggaacaa
tggtttttgatcaagcatcaggacgaatttgcccgaccagaaagtgaatacgacatcgtc
aacaccgaaccccatagcgtgctgagcgaacgcactatcgtgcagaagaagtgctcggga
aaatcggctgatcccaaacctgtcgaaaaggccaccgctgcgcggaagaagcctgggcac
acgcaactggttagtgcccgatcctcgacgctccccgacagtctcaagcctgaactggcc
acgctggtggattgcgcgccggagggcgattggcgctacgagatcaaattcgacggttac
cgcatcatggccaaagtcggtgatggcaaggtgcagttgtttacccgcaacggtcacgac
tggacacacaaacttcctcgtcaggccgaagcgattgccagcctcgccctggagtccgcc
tggctcgatggcgaaatggttgttgccaatgcgcagggcgtccccgatttccaggcactc
caaaatgcatttgagcagggccgtagcggcaacattgtttattacctttttgacctgcct
tttctcaacggcatggatctaagggaagtcccgttagagcagcgccgcgaagcgttatcc
aaggtgttggagcgcagtgaggacgaggtactcaaattctcggacgacttcgccgaaacc
ccggcagcgctgctgaacagcgcttgccaaatgcaaatggaaggcctcatcggtaaacgc
gtgggcagcccgtacgtctcacgtcgcagcggcgactggattaaactcaaatgtaaacgg
cggcaggaatttgtcatcgtcggctttaccgaccctaagggttcacgcagcaaattcggc
gccctgttattgggcctgcatgacgctgacagcggcgagcttaaatactcaggcaaagtc
ggcaccgggttcaaccaagtgacactggcgacgatctacgcacaactgacgccccttgag
accaaaaagcctgccgtcgtaaacccgccgacgggcgccgacgccaaggacgttcattgg
ctcaagccatctttgctggcagaagtcgcttttgccgaaataacccaggagggttcggtc
aggcacgccgtgttccagggattgcgcaacgataaacccgcaaaatcgatcaccgaagag
cgcccggcggaaaccccgcagatcgagaaaaagcccgaccggaaaaaacctcctgcggcg
gcggccaagggtaaaggcggcgaagaggccgccacaaggatccggctcacgcacccccaa
cgcgtgattgaccctacgagcagcgcaaccaagcgtgacttggcggactattacatcggt
gtatctgaatggctcttgccgcagttgctcaaccgcccggtcgcgttggtgcgtgcgcca
gaaggtatcggcggggaactgtttttccagaaaaacgccgagcgactggcaatccccgga
atcgagatcatcggtaaagaagagacgggccacccggtgatgttaatcaataatatcgag
gcgctgataggcgcggtgcagatgagcaccatagagctgcacacctggaacgctgtctcc
aaggacctgcatcgccctgatcgatttattctcgacctcgaccccgaccctgccctgtcc
tggaagagcatggtggaggcaacccaactgacactcacggtgctggacgagttagggctc
acatcattcctgaaaaccagcggcggcaagggtattcacattgtcgtaccgttgacgccg
aaggcagattgggacgcggtaaaaagcttcagccacgcggttgtcaaacacatcgccaat
ctgcttccagatcgattctcggccgtttccggacctgaaaaccgggtaggtcgaatcttc
atcgattacctgcgcaatggcttgggcgcaaccaccatttgcgcttactcggcgcggacg
cgtgaggggctgccggtatcagtgccgattttccgcgaagagctgaaagagatcaaaggt
gccaacgtctggaacattcaaaacatccatcaacgcctgggagcgctgggcgttgatccg
tgggctgacatgcctggaacaaagcaaaccatcacggcccaaatgcgtaagcgcataggt
ctcaagtag
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