KEGG   PATHWAY: ppt00030
Entry
ppt00030                    Pathway                                
Name
Pentose phosphate pathway - Pseudomonas putida S16
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppt00030  Pentose phosphate pathway
ppt00030

Module
ppt_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ppt00030]
ppt_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ppt00030]
ppt_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ppt00030]
ppt_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ppt00030]
ppt_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ppt00030]
Other DBs
GO: 0006098
Organism
Pseudomonas putida S16 [GN:ppt]
Gene
PPS_4547  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PPS_1450  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PPS_3447  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PPS_5199  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PPS_1051  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PPS_1052  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
PPS_3448  6-phosphogluconate dehydrogenase-like protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PPS_0411  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PPS_2236  transketolase central region [KO:K00615] [EC:2.2.1.1]
PPS_2237  transketolase domain-containing protein [KO:K00615] [EC:2.2.1.1]
PPS_4809  transketolase [KO:K00615] [EC:2.2.1.1]
PPS_3480  transketolase [KO:K00615] [EC:2.2.1.1]
PPS_3481  putative transketolase, C-terminal subunit [KO:K00615] [EC:2.2.1.1]
PPS_1735  transaldolase [KO:K00616] [EC:2.2.1.2]
PPS_4998  ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
PPS_2025  ribokinase [KO:K00852] [EC:2.7.1.15]
PPS_3073  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
PPS_5138  phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
PPS_1418  phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
PPS_3813  phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
PPS_0773  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
PPS_1039  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
PPS_1053  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PPS_2922  aldehyde dehydrogenase [KO:K00131] [EC:1.2.1.9]
PPS_4204  glucose dehydrogenase (pyrroloquinoline-quinone) [KO:K00117] [EC:1.1.5.2]
PPS_1791  SMP-30/gluconolaconase/LRE domain-containing protein [KO:K01053] [EC:3.1.1.17]
PPS_2860  gluconate 2-dehydrogenase, acceptor subunit [KO:K06151] [EC:1.1.99.3]
PPS_2861  gluconate 2-dehydrogenase, acceptor subunit [KO:K06152] [EC:1.1.99.3]
PPS_4429  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PPS_2856  ribokinase-like domain-containing protein [KO:K11441] [EC:2.7.1.13]
PPS_2854  gluconate 2-dehydrogenase [KO:K00032] [EC:1.1.1.43]
PPS_2896  carbohydrate kinase, thermoresistant glucokinase family [KO:K00851] [EC:2.7.1.12]
PPS_3704  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PPS_0839  thioredoxin reductase [KO:K22345] [EC:4.3.1.9]
PPS_4804  fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
PPS_4885  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ppt00010  Glycolysis / Gluconeogenesis
ppt00040  Pentose and glucuronate interconversions
ppt00052  Galactose metabolism
ppt00230  Purine metabolism
ppt00240  Pyrimidine metabolism
ppt00340  Histidine metabolism
ppt00630  Glyoxylate and dicarboxylate metabolism
ppt00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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