Pseudomonas putida S16: PPS_1562
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Entry
PPS_1562 CDS
T01570
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPS_1562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_1562
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPS_1562
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPS_1562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
HAMP
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AEJ12137
UniProt:
F8FS67
LinkDB
All DBs
Position
1732519..1734534
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AA seq
671 aa
AA seq
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MSEFQLVTRFQPAGDQPEAIRQMVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLEAVEGIKEELKDRLEYLQKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVAQGERVLATTLTKRMAEDLTDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADNITGSMQRAIDETERRREKQIAFNQANGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
IAQLRERLITS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgtcacccgtttccagccggccggcgaccagcccgaggccatc
cgccagatggtcgaaggtatcgaggcggggctgtcgcaccagacgctgctcggggtgact
ggctcgggcaagaccttcagcatcgccaacgtcattcagcaggtgcagcggcctaccctg
gtgcttgcgccgaacaagaccctggccgcgcagctttatggcgaattcaaggcattcttc
cccaacaatgcggtggagtacttcgtttcctactacgactactaccagcctgaagcctac
gtaccgtcgtccgacaccttcatcgagaaggacgcttcgatcaacgaccacatcgagcag
atgcgcctgtcagcgaccaaggcattgctggagcggcgtgacgcgatcatcgtcaccacc
gtgtcgtgcatctacggcctgggcagccccgagacctacctgaaaatggtcctgcacgtg
gaccgcggcgacaagctcgaccagcgcgcgctgctgcgccgcctggccgacctgcaatac
acccgcaacgagatggactttgcccgcgccaccttccgcgtgcgcggcgatgtgatcgac
atcttcccggccgaatcggacctcgaggccatccgcgtcgaactgttcgatgacgaggtg
gagaacatcgcagccttcgacccgctgaccggcgaggtcttccgcaaactgccgcgtttc
accttctaccccaagagccactacgtcaccccgcgggaaaccctgctggaggcggtggaa
ggcatcaaggaagagctcaaggaccgcctggagtacctacagaaggccaacaagctggtc
gaggcccagcgcctggagcaacgcacccgcttcgatctggagatgatcctggagctgggc
tactgcaacggcatcgagaactactcgcgctacctgtccgggcgcccggccggggcgccg
ccgcccaccctgtacgactacctgccgcccgatgcgctgctggtgatcgacgaatcccac
gtcagcgttccgcaggtcggcgccatgtacaagggcgaccgctcgcgcaaggaaaccctg
gtcgagtacggcttccgcctgccttcggcgctggacaaccggccgatgcgtttcgacgag
tgggaggacgtcagcccgcagaccatcttcgtctccgccaccccgggcccctatgaggcc
gagcacgccgggcgcgtggtagagcaggtggtgcgccccaccggcctggtcgacccacag
gtggaagtacgcccggcgcttacccaggtggatgacctgctgtcggaaatccgcaagcgc
gtggcacagggcgagcgggtgctggccaccacgttgaccaagcgcatggccgaagacctc
accgactacctggccgaccacgatgtgcgggtgcgttacctgcactcggacatcgacacc
gtcgagcgggtggagatcatccgcgacttgcgcctgggtaccttcgacgtgctggtgggc
atcaaccttctgcgtgagggcctggatatgcccgaggtgtcgctcgtggcgatcctcgat
gccgacaaggaaggtttcctgcgctccgagcgctcactgatccagaccatcggccgtgct
gcgcgtaacctcaatggccgggccatcctgtatgccgacaacatcaccggttccatgcag
cgcgccatcgacgagaccgagcgtcgtcgcgagaagcagatcgccttcaaccaggccaat
ggcatcgtgcccaaaggcgtggtcaaggacatcaccgatatcatggaaggcgcgaccgtg
cccggcgcgcgcagcaagaagcgcaagggcatggccaaggcagcggaggagagcgcccgt
tacgaggccgagctgcgcacgccgggcgagatcaccaagcgcatcaagcagctggaagag
aagatgatgcagttcgcccgcgatctggagttcgaggccgcggcgcaattgcgcgacgag
attgcccagctgcgtgagcggttgatcaccagctga
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integrated database retrieval system
