Pungitius pungitius (ninespine stickleback): 119216265
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Entry
119216265 CDS
T07626
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119216265
03015 mRNA surveillance pathway
119216265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119216265
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119216265
5.6.2.5 RNA 5'-3' helicase
119216265
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119216265
mRNA cycle factors
Common to processing body (P body) and stress granule
119216265
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
AAA_16
Helicase_RecD
nSTAND3
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119216265
NCBI-ProteinID:
XP_037324822
LinkDB
All DBs
Position
Unknown
AA seq
1200 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGGNSPRFTSSQWSCGTDRAPPISFQSS
EVHANSPNPASFGGMCVVAFCLRLLSIGFFVRARYRIICFYQHSSSSPLYLIFILSIEVC
IIFVLVSIPDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDIFKDYGDEIAIELRSSVG
APVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVTIKCQLP
KRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATVVYHLSRQGNGPVLVC
APSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLALHNQISNMDSMPELQKLQQL
KDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQ
ATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQV
QYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQPDKPMFFYVTQGQEEIASS
GTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQQ
VEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALS
KQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGGRFMSTAMYDAREA
LIPGSAYDRSNTAGRQSNMYFQTHDQIGMIGAGPGHMSAMNIPIPFNLVMPPMPPPSYLG
QTNGPVAGRGAMKGKPGRGGRQRARGSAHQGASQGNGPNSQASQDGASQPFSQGPLTQGY
ISMSQPSQMSQPGLSQAELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaagggcagacccaaagccagctggacaaccaggtaaatggt
cctgatgagggtcttctcaacggcggtgtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggacgaggaagacacgtactacactaaagacctgcca
ctgcacgcgtgcagctactgtggtattcatgatccagcatgtgttgtttactgcaatacc
agcaaaaagtggttctgcaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtaacactgcataaagatgggccgctgggcgagaca
gtgctggagtgttacaactgtggttgtcgcaacgtcttcctcctgggcttcatcccggct
aaggccgattccgtcgtggtactactctgccgacagccctgtgccagccagagtagcctc
aaggatatcaactgggacagctcgcagtggcagccactaatccaggaccgctgctttctg
tcctggctggtgaagatcccatcggagcaggagcagcttcgagcccgtcagattactgcc
cagcagatcaacaagttggaggagctgtggaaggacaaccctactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcatgtactgctgcgctatgaggatgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctattttacactgcccaagacggattcaggtggtaattctccaagattt
acttcctcccagtggtcctgtggtacagatagagcccctcccatctcctttcagtcctca
gaagtgcacgcaaactccccaaatcctgcatcttttggtggcatgtgtgttgttgctttt
tgccttcgtctcttgtcaataggtttttttgtgcgtgcacggtaccgtatcatttgtttt
tatcaacatagctcatcctccccactttatttaattttcattttgagcatagaagtgtgt
ataatttttgttcttgtatcaatcccagatatgcggctcatgcagggggatgagatctgc
ctgcggtacaaaggagacctggcccctctgtggaaaggcattggtcatgtcatcaaagtc
ccggacatctttaaagactatggggatgaaattgccattgagctgcgtagcagtgttgga
gcacctgtggaaatccctcacaacttccaggtcgactttgtgtggaagtccacgtctttt
gaccggatgcagagcgccctgaagacttttgcggtggacgagacctcagtgtctggttac
atttaccataaactgttgggccacgaagttgaggatgtcaccatcaagtgccagctgccg
aagcgtttcactgcgcagggcctgcccgacctcaatcactcacaggtgtacgctgtaaag
acggtgctgcagaggcctctgagtctgatccaaggtccccctggcactggaaagactgtc
acctcggcaactgtcgtctaccacctgtcccgacaaggcaacggaccagttctggtgtgt
gctcccagtaacattgcagtggatcagttgacggagaagattgacaagacaggactgaag
gtcgtcaggctttgtgctaagagccgggaggccatcgagtccccggtatcctttctagct
ctgcacaaccagatcagcaacatggacagtatgcccgagcttcagaagctacagcagctg
aaggatgagactggcgagctgtcctctgctgatgagaagcgctacagggctttgaagcgc
acagctgagagggagctgctcatgaatgcagacgttatctgttgtacctgcgtcggagct
ggagatcctcgtctggctaagatgcagttccgctccatcctgattgacgaaagcacccag
gccacggagccagagtgcatggtgcctgtggtgcttggagccaagcagctaattctggtg
ggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagccaaggcaggtctc
tcccagtccctgtttgagcgcttggtggttctggggatccggcccatccgcctccaggtc
cagtaccgtatgcacccggctcttagtgccttcccctccaacatcttctacgagggttcc
ctgcagaacggcgtcactgcagctgaccgcatcaagaaaggctttgacttccagtggccg
cagccggacaagcccatgttcttctacgtgactcagggtcaggaggagatagccagctcc
ggaacctcctaccttaacaggactgaggctgcaaacgtggagaagatcaccaccaggctg
ctgaaggctggagccaaacctgaccaaatcggaatcatcaccccgtacgagggccagcgc
tcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctatcagcaa
gtggaaattgccagcgtggatgcctttcagggcagagagaaggacttcatcatcctttct
tgtgtccgtgccaatgagcaccagggaatcggctttctgaacgacccgcgtcgcctcaac
gtggcgctgacccgagccaagtacggtgtgatcatcgtgggaaaccccaaggctctctcc
aagcaaccgctgtggaacaacctgctgaacaactacaaggaacagaaggttctggtggag
gggcccctgaacaacctgagggagagcctcatgcagttcagcaagccccgcaagctggtc
aacaccatcaaccctgggggacgtttcatgagcactgcaatgtacgatgcccgtgaggcc
ctcatccccggctctgcttacgaccgcagcaatactgccggacgtcagtccaacatgtac
tttcaaactcacgaccagattgggatgattggggcgggccccggtcacatgtctgctatg
aatattcccattcccttcaaccttgtgatgccaccaatgcctccgcccagctacctgggt
cagaccaacggccctgttgcaggtcgtggagctatgaagggcaagcctggccgtggcggg
aggcagcgggcccgaggttcggcacaccagggtgccagtcagggtaatggacccaacagc
caggccagccaggacggggcctcccagcccttctcccaggggccgctgacacagggctac
atctccatgagccagccctcccagatgagccagcctggcctctctcaggcagagctgtcc
caggacagctacctgggcgatgagttcaagtcccaaatcgacgtggctttgtcccaggac
tcaacttaccagggtgaacgtgcataccagcatggtggcgtgactggactgtcacagtac
taa
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integrated database retrieval system
