Pungitius pungitius (ninespine stickleback): 119220028
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Entry
119220028 CDS
T07626
Name
(RefSeq) RNA binding protein fox-1 homolog 2-like isoform X1
KO
K14946
RNA binding protein fox-1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119220028
Spliceosome [BR:
ppug03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
119220028
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
DUF8400
RRM_ACIN1
RRM_5
RRM_8
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
119220028
NCBI-ProteinID:
XP_037331503
LinkDB
All DBs
Position
12:complement(19728435..19761818)
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AA seq
469 aa
AA seq
DB search
MLMSTDVASILLPVSRGIMERDMDTAAGALANAAGGPAAVRGMKRGDPEPDAQTAAALTD
LAEAECKRARIDGTGGVVGDIGQNNEPLNPGFHGYPPHSQGSQDSTGGQEGLVAPPFSAF
PPPPPPQNGLPGTEFGPGAMFVGGGTADVGAGANGAPSTSPTSSNNGKTEELPQGDVGVQ
CGTGGTGGGGSVEDPSEAKGTPKRLHVSNIPFRFRDPDLRQMFGQYGKILDVEIIFNERG
SKGFGFVTFETSADAERAREKLHGTLVEGRKIEVNNATARVMTNKKMVSPYPNGEALSTL
PYAGWKLSPMMGAVYGPEIYADQLLTHLLSRPSVPGFPYPSAAAAAATTAAAFRGAHLRG
RGRPVYSAVRAAVPQPAIPTYPGVVYQDGFYGAADLYGGYPAAAAAAAAAYRYAQPTAVT
GATAAAYSDSYGRVYTTDPYHALSPAAAAYGVGAMASLYRAGYSRFAPY
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgtcgaccgacgttgcatccattctgctacccgttagtcggggaataatggag
cgggacatggatacggcagcgggagccctcgcgaacgcggccgggggtccggcagctgtc
cgcgggatgaagcgaggggacccggagcccgacgcccaaacagccgctgccctgaccgac
ttggccgaggcggagtgcaagagagcccggatagacgggaccggaggtgtcgttggcgac
attggacagaacaatgagcctttaaaccctggtttccatggatacccacctcacagtcag
ggttctcaggattcgacaggaggacaggagggattggtggccccgcccttttcagcgttc
ccccctccaccgcctcctcagaacgggctcccagggacagagttcggccccggggccatg
tttgtcggcgggggcacggcagacgtgggggcgggtgctaatggtgccccctccaccagc
cccaccagcagcaacaacggaaagacagaggagttgccccagggcgatgtgggtgtacaa
tgcggcacaggaggcacggggggaggaggctctgtggaagacccctcagaggccaaaggg
acccccaaacgcctccacgtctcaaacatccccttccgcttccgcgaccctgacctcagg
cagatgtttgggcaatatgggaagattctggatgtagagatcattttcaatgagcggggc
tcaaagggtttcggctttgtgacatttgagaccagcgcggacgcagagagagccagggaa
aagctccacggcacgctggtggaaggtcgcaagattgaggtgaataacgccaccgccagg
gtgatgaccaacaagaaaatggtcagcccctatcctaacggggaggctctcagcacgctg
ccctacgccgggtggaaattgagtcccatgatgggcgccgtgtacggacctgagatctac
gcagatcagctgctgacgcaccttctttctcgtccttcagtcccagggttcccatacccc
tcagcggcggccgcggcggccaccacggcggcggcgttccgcggcgcccacctgcggggg
cggggccggcccgtctacagcgcagtgcgggccgccgtgcctcagcccgccatccccacc
taccccggtgtggtgtatcaggatgggttttacggagctgccgacttgtatggaggctac
cctgctgctgctgctgctgccgccgccgcgtatcgctacgcccagcccaccgccgtaacc
ggggcaaccgccgcagcctacagcgacagttatggccgggtgtacacaacggatccctac
cacgccttgtccccggccgccgctgcctacggagtgggagcaatggccagtttataccgg
gcagggtacagtaggtttgctccttactaa
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