Pungitius pungitius (ninespine stickleback): 119226178
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Entry
119226178 CDS
T07626
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119226178 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119226178 (nup54)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119226178 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
119226178
NCBI-ProteinID:
XP_037339683
LinkDB
All DBs
Position
Unknown
AA seq
580 aa
AA seq
DB search
MAFSFGGATSNPAASTSGFSFGSFGAKPTASTAAFGFGPAATTAASGFGTLTAPGFGAAA
TTAAAPATGFSFGSTNTGFGGLGAGSTTAGTFGGFGTTTTTAAAPGSTFSFAGPANTAGG
LFGNTQNKGFGFSSGLGAGTAAGATGFGTGLGTTGLGGFAGFNIQPAQQQPGGLFGQQAQ
LQGQAQPTLLYQQVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNQPVDFSQE
NPFCRFKAVGYSCVPVSKDEDGLVVLLFNRKEADVRAQQQPLVESLHKVLGNNQTLTVNV
DGVKALPNDQTEVIVYVVERSPNGTSKRIPATTLFSYLEQANVKVQLTQIGVVMSVARTE
LSPAQLKQLLQNAPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELFRRLQIQDQMNKQH
QTRVDIISSDISDLQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDE
EHLRVQLDTIHSELNAPTQFKGRLNELMSQIRMQNHFGAARSEERYSVDADLLREIKQHL
KQQQDGLSHLISVIKDDLEDIKLIEHGLSDSGHMKGGILS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggagccacgagtaacccagctgcaagcacgtccgggttttct
ttcggttcatttggtgccaaacccaccgcatcaacggcagcgtttggctttggccccgca
gccaccaccgccgcatccggattcggcactctgacagcccctggttttggggcagccgcc
actactgctgccgcaccggccacaggatttagttttggctccaccaacactggatttggg
gggctgggagctggaagcaccacggctggcacgtttggtggctttgggacaactacaaca
actgctgctgcaccagggtccacatttagctttgctggtcccgccaacactgcaggaggc
ctgtttggtaacacgcagaacaaaggttttgggttctcctctgggcttggcgctgggacc
gctgcaggggcaactggatttggaactgggctaggaacaactggcctcggtgggtttgca
ggctttaatatccagccagctcagcagcagccagggggcttgtttggccagcaggcccag
ctacagggtcaggctcagcccaccctgctctaccagcaggtcactgctctttcagctccc
actttgttgggagatgagcgtgactccattttagccaagtggaaccagttgcaggcctac
tggggcactgggaagggctactacagcaacaacaaccaacccgttgacttcagccaagag
aaccctttctgcagattcaaggcggtcggctacagctgtgtcccagtgagtaaggatgag
gatggtttggtggtcttgctttttaatagaaaggaagctgatgtgcgagctcagcagcag
ccactggtggagtccctccacaaggtcctgggaaacaaccagaccctcactgtcaatgtg
gacggcgtcaaagctctgcccaatgaccagaccgaggtgatcgtttacgtggtggagcgt
tctcccaatggcacatccaagcgcatccccgccaccacgctgttcagttatctggagcag
gccaacgtcaaagtccagctcacgcagatcggcgtggtcatgtccgtggcacgcacagag
ctgtctccggctcaactcaagcagctgcttcaaaacgcacctgcaggagtggaccccatt
atttgggagcaggctaaggtggacaacccggacccagagaagttaataccagtgcccatg
gtgggtttcaaggagctttttcgcaggctgcaaatccaggatcagatgaacaaacagcac
cagaccagagtggatattatatccagtgacatcagtgacctccagaagaaccaggcgacc
acagtggctaaaatagcccagtacaagaggaagctgatggatctctctcacagggtgctg
caggtgctaatcaaacaggaaattcagaggaaaagtgggtatgctatccaagtggatgag
gagcacctgagggtgcagctggacaccattcactctgaactaaatgcccccacgcagttc
aagggtcgtttgaatgaattaatgtcccaaatccggatgcagaatcacttcggggctgcg
agatcagaggagcgctacagtgttgatgcagacctgctgagggaaatcaaacaacacttg
aaacagcagcaggacggtttaagtcatttgatcagcgtcatcaaagatgacttggaagac
atcaaactcatagagcacgggctgagtgacagtggacacatgaaaggaggcattctgagc
tga
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