Pectobacterium punjabense: E2566_08820
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Entry
E2566_08820 CDS
T06530
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
ppuj
Pectobacterium punjabense
Brite
KEGG Orthology (KO) [BR:
ppuj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppuj03400
]
E2566_08820
DNA repair and recombination proteins [BR:
ppuj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
E2566_08820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
zf-tcix
DZR
zinc_ribbon_2
AAA_22
SLFN-g3_helicase
AAA_16
zf-ribbon_3
UPF0547
AAA
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QJA20012
LinkDB
All DBs
Position
complement(1937795..1939555)
Genome browser
AA seq
586 aa
AA seq
DB search
MSFTLRPYQREAVSATLDYFRRHTQPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVAQNHAKYCAWDLEADIFAAGLQQRESQGKVVFGSVQSVARNLNQFDNAFSLLIIDECH
RISDDDNSQYQQIIQHLQKTNPQLRLLGLTATPYRLGKGWIYQYHYHGMIRGDERSLFRD
CIYELPLRYMIKHGFLVPPDRLDMPVVQYDFSKLVARSSGIFSEADLNLELKRQQRITPH
IISQVIDYAQTRRGVMIFASTVEHAKEITTLLPAGQAALVSADTPAAERDALIDAFKQQS
LRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLYPGKTDCLILDYAGNP
HDLYTPEVGNSKPHAGSQPVQVFCPECGFANLFWGKTTPDGDIIEHYGRRCQGWEIAESG
QRQQCDFRFRFKVCPHCGAENDIAARRCHQCDEVLVDPDDMLKAALKLKDALVLRCSGMS
FEQGQDAKGEWLKILYHDEDGAEVSERFRLHSTAQRHVFLQQFLRVHQRAPGTPFSWQNA
ADVVAQQKLLRAPDFVVARKNGKFWQIREKIFDYQGRFRRANELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacactacggccttaccagcgtgaggctgtttccgccacgctcgactatttt
cgccgccatacccaaccggctgttatcgttttgcctactggcgcagggaagagcctggtc
atcgccgaactggcacggcttgcacgcggccgtgttttggtgctcgcacacgttaaagaa
ctggtggcgcaaaatcacgctaaatactgcgcctgggatttggaagcggatatcttcgcg
gcagggctgcaacagcgagagagtcagggaaaagtggtctttggcagcgtgcagtccgtt
gcccgtaatctcaaccagtttgataatgcgttctcactgttgatcattgatgaatgccac
cgcatcagcgacgacgataacagccaatatcaacaaatcatccagcatctgcaaaagact
aacccacagctgcgattgctcggcttaacggcgacgccctatcggcttggcaaaggctgg
atatatcagtatcactatcacggcatgatccgtggcgacgaacgcagtttgttccgcgac
tgcatctatgagctgccgctgcgttatatgatcaagcatggctttctggtgccgcctgat
cgactggatatgccagtggtgcaatatgatttcagtaagctcgtcgcccgcagcagcggg
atattcagcgaagccgacctgaacctcgaactcaaacgtcagcagcgcattacgccacac
atcatcagccaggtcatcgattatgcgcaaacgcggcgcggcgtgatgatttttgcgtcc
accgtcgaacatgccaaagaaattacgaccttgctaccggccggacaggctgcactggtt
agcgccgataccccagcggccgagcgagatgcgctgattgatgcctttaaacagcagtcg
ctgcgctatctggtcaacgtggcggtgctaacgaccgggtttgacgccccgcatgtcgac
cttattgctatccttcggccaacagaatccgtcagcctgtatcagcaaatcgtcgggcgt
ggtttacgtttatatccgggaaaaacggactgcctgatactggattacgcgggtaacccg
cacgatctctatacgccagaagtcggcaacagcaaaccgcatgctggcagccagccagtg
caagttttctgccctgaatgtggttttgccaatctgttctggggaaaaaccactcccgat
ggcgatatcatcgaacactatggccgccgctgtcagggttgggaaatagcagaaagtggc
caacgccaacagtgtgattttcggtttcggtttaaagtttgtccgcactgcggagcggag
aatgatatcgcggcgcggcgctgtcaccagtgtgacgaggtgttagtcgatcccgacgac
atgctgaaagcggcgctgaagctgaaagatgcgctggttttgcgctgtagtggcatgagt
tttgaacagggacaagacgcaaaaggagaatggctgaaaatcctctaccacgatgaggac
ggtgcggaagtgagcgaacgttttcgtctgcattctaccgcgcaacgccacgttttcctg
caacagttcttacgcgttcaccaacgcgcaccgggaacgccgtttagctggcaaaatgcc
gctgacgtcgttgcacaacagaaattattacgtgcgcccgactttgtcgtcgcgcgtaaa
aacggaaaattctggcaaatacgcgaaaagatctttgattatcaggggcgctttcgccgc
gccaacgaactccgcggctaa
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