Pseudomonas putida NBRC 14164: PP4_01560
Help
Entry
PP4_01560 CDS
T02707
Name
(GenBank) putative RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PP4_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppun03021
]
PP4_01560
Transcription machinery [BR:
ppun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PP4_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
HTH_23
Sigma70_r4
HTH_29
GerE
HTH_11
HTH_Tnp_ISL3
HTH_24
HTH_28
HTH_40
HTH_7
HTH_31
HTH_36
TnsD
HTH_10
Motif
Other DBs
NCBI-ProteinID:
BAN52009
LinkDB
All DBs
Position
complement(178548..179051)
Genome browser
AA seq
167 aa
AA seq
DB search
MPSNDSVQTLYSDHHGWLHAWLRSKLGNAADAADLAHDTFVRLLQRREHLQLNTPRAFLR
TVARGLVIDHWRREELHRAYLEALARVPEAQYPSAETRELLLELLERIARMLDGLKPKVR
RAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALFHCYVLRYEDEC
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcaacgactccgtgcaaacgctctacagtgaccaccacggctggttacacgcc
tggctgcgcagcaagctgggcaatgccgccgatgccgcagacctggcccacgacaccttc
gtccgcttgctgcaacgccgcgaacacctgcagctgaatacccctcgggcgttcctgcgc
acggtagcgcgtgggctggtcatcgatcactggcgccgcgaggaactgcacagggcctac
ctggaggcactggcccgtgtgccggaagcacagtatccctcggccgaaacccgcgagctg
ctgctggaattgcttgagcgtattgcgcgcatgctcgacggcctcaaacccaaggtacgt
cgcgccttcctgctggcccaatgcgaggggctgaagcaccaggccattgccgagcagatg
gggatctcggtgcgtaccgtggagcgttacatcgccgatgcgctcttccattgctatgtg
ctgcgctatgaagatgagtgttga
DBGET
integrated database retrieval system
