Pseudomonas putida NBRC 14164: PP4_30630
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Entry
PP4_30630 CDS
T02707
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PP4_30630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppun03400
]
PP4_30630 (ligD)
Enzymes [BR:
ppun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PP4_30630 (ligD)
DNA repair and recombination proteins [BR:
ppun03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PP4_30630 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAN54916
LinkDB
All DBs
Position
3465627..3468095
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AA seq
822 aa
AA seq
DB search
MAKPLQEYLRKRDFNATPEPAGKRAHPRPAHGLQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYASFEGHIPEGHYGAGDVIVWDRGLWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGEARSEADYSIVEALPDSVL
SDRTLVPRRPARAATSTRKRKASAGALPEMLQPQLATLADSPPEGDWRYEVKFDGYRMLA
RIDGDDVRLFTRNGHDWSAKLPHQVQALKALGLDSAWLDGEMVVTDENGVADFQALQAAF
DNEHDDDITYYLFDLPYLGGKDLRELPVQDRRATLAKLLKHNASAILKFSEDFNQPVDAL
LDSACRLGLEGLIGKRADSPYVGRRSSDWVKLKCTQRQEFVIVGYTAPKGSRQGFGALLL
ALHDTDSGQLRYAGKVGTGFSAATLTSILTRLKPLHTAKPPLPEPPSGADARGVHWLKPE
LLAEVAYAQMTRTGIVRHAVFHGLRDDKPATAIALERAMPVKNAAHAEPKGLSNLHLTHP
DRVIDKTSGTSKRQVAEYYAQVADWLLPQLEHRPVALVRAPEGLDGELFFQKHAGQLHLP
KLTSYTKAQAGQAAMVLNSAESLLGAVQMNMLELHTWNATDKNFDRPDRFILDLDPDPAL
PWKAMLEATQLPLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWEEVKDFSHALVKHMA
DLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELPKLK
SANQWNIGNLQARLAQVDDPWAELGSTRQSITLRMRKQLGIA
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtacctgcgcaagcgtgacttcaacgccacacccgagccg
gccggcaagcgtgcccacccacggccggctcacgggttgcagtactgcatccagaagcac
gacgccagccacctgcactatgactttcgcctggagctggatggcaccctgaaaagctgg
gcgattcccaagggcccttccctcgaccccaaggtccgccgcctggccgtgcatgtagaa
gaccatccgctggactacgccagcttcgaagggcacatccctgaaggccactacggcgcc
ggcgacgtgatcgtgtgggaccgggggctctgggagcccgaaggcgacccgcgcgaggcc
tatgccaagggcaagctgcgctttcgcctgcaaggtgaaaagctgtcgggggtctggaac
ctgtttcgtacccacctggctggcaagaaagagcagtggatgctggtcaagtcccacgat
ggcgaggcccgcagcgaagcggactacagcatcgtcgaagccctgccggacagcgtattg
agcgaccgtacactggtcccccgccgcccagccagggcggcgacctccacgcgcaagcgc
aaggccagcgctggcgccctgccggagatgctccagccgcagctggcaaccctggccgat
tccccccccgagggtgactggcgatacgaggtcaagttcgatggttaccgcatgctggcc
cgcatcgacggggacgatgtgcgcctgtttacccgcaatggccacgactggagcgcaaag
ctgccccatcaggtgcaggcgctgaaagcgttggggctcgactcggcatggctggacggt
gagatggtggtcactgacgagaacggcgtggccgacttccaggccttgcaggccgcgttc
gacaacgagcacgacgatgacattacctactacctgttcgacctgccctacctcggcggc
aaggacctgcgtgaattgcctgtgcaagaccgccgggcgaccttggccaaactgctgaag
cacaacgcatcggccatcctgaagttttccgaagacttcaaccagccggtcgacgcgctg
ctcgacagcgcctgccggttaggcctggaaggcctgatcggcaagcgcgccgacagcccc
tacgttggccggcgcagcagcgactgggtcaagctcaagtgcacgcaacgccaggagttc
gtgatcgtcggctacaccgcgcccaagggcagccgccaaggctttggggccctgctgctg
gcgctgcacgacaccgacagcggccagttgcgctacgccggcaaggtgggcaccggcttc
agtgctgccacgctgacgagcatcctcacccgcctgaaacccctgcacaccgccaagcca
cccttgcctgagccccccagcggtgccgatgcgcggggcgtgcactggctcaagccagaa
ctgctggccgaggtcgcctacgcccagatgacccgcacagggatcgtgcgccatgcggtt
tttcacgggttgcgcgacgacaagcccgccactgccattgccctggaacgtgcaatgccg
gtaaagaacgcagcacatgcagagcccaagggtttgagcaacctgcacctgacccacccc
gaccgcgtgatcgacaagaccagtggcaccagcaaacgacaggtggcggagtactacgcc
caagtcgccgactggctgctgccacagctcgaacaccgccccgtggcgctggtgcgcgca
ccggagggcctggacggcgagctgttctttcagaagcatgcggggcagttgcacctgccc
aagctgaccagctacaccaaggcccaggccggccaggcggcaatggtgctcaacagcgcc
gagagcctattgggcgcagtacagatgaacatgcttgaactgcacacctggaacgccacc
gacaaaaatttcgacaggcctgaccgcttcatcctcgacctcgaccccgacccggcattg
ccatggaaggccatgctcgaggccacccagctgcccctcaccctgctcgatgagctgggc
ctgaaggtgtttctcaagaccagcggtggcaaaggcatgcacctggtcgtgccgctcacc
cgtcgggccggctgggaggaagtgaaggacttcagccatgccctggtcaaacacatggca
gacttgttcccggaccggctcagcgcggtctccgggcccaagaaccgggtcgggcgcatc
ttcatcgactacctgcgcaacggcaagggcgctaccaccgtggccgcctactcgctgcgc
gcccgcgaaggcctgccagtgtcggtgccgatctggcgcgaggagctgcccaaactcaag
agtgccaaccaatggaatatcggcaacttgcaggcgcggcttgcgcaggtggacgaccct
tgggccgagctgggctcgacccggcaatcgatcaccctgcgcatgcgcaagcaactgggg
atcgcatga
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