Pseudomonas putida H8234: L483_07985
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Entry
L483_07985 CDS
T02706
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L483_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_07985
Enzymes [BR:
pput01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L483_07985
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L483_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGN78462
LinkDB
All DBs
Position
complement(1736570..1739995)
Genome browser
AA seq
1141 aa
AA seq
DB search
MSATAGKQTWGNLPGAALSLAIAEAASNAGRFTLLLTADSQAADRLEQELRFFAPDLPVL
PFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFLLGSSL
VLDVGQTIDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDE
IETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDL
ASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRGRYEDRRGD
LSRPLLPPAELFMPVEDCFARLKQWPRVVVSSEDIEPGAGRERFPARALPNLAIEAKANQ
PLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVDGWADFITGSERLAITI
APLDDGLLLDDPGLALVAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHI
DHGVGRYLGLATLEIEGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLG
SEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQ
TAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHY
NSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLA
IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSV
RTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMR
ERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQ
IQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLIL
YKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLQAEKLGIKKVDAGPNGGK
LEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQP
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacggccggcaaacaaacctggggtaacctgcccggtgccgccctcagcctt
gccatcgccgaggccgccagcaacgctggccgcttcaccctgctgctgacagccgacagc
caggccgccgaccgtctggagcaggagctgcgcttcttcgccccggacctgccggtgctg
ccattccccgactgggaaaccctgccctacgacctgttctcgccacaccaggacatcatt
tcccagcgcatcgcaagcctgtaccgcctgccggaactgagccatggcatcctcgtggtg
ccggtcaccaccgccctgcaccgcctggcgcccacccgcttcctgctgggcagcagcctg
gtgctggacgtgggccagaccatcgacgtggagcagatgcgcacacgcctggaggccagt
ggctatcgttgcgtcgacaccgtctacgagcatggcgagttcgccgtgcgcggcgcgctg
atcgacctgttcccgatgggcagcaagctgccctaccgcatcgacctgttcgatgacgag
atcgagacactgcgcaccttcgaccccgagacccagcgctcgatcgacaaggtggattcg
gtgcgcctgctgccggcacgcgaatttccgatgcaaaaagaggaagtgacccgcttcaag
gcacgcttccgtgaacgcttcgacgtcgatttccgccgcagtgcgatcttccaggacctg
gccagcggcatcatcccggccggcatcgagtactacctgccgttgttcttcgaagaaacg
tccaccctgttcgactatctgccggccgacacccaggtgttttcgctgcctggcgtggaa
caggccgccgaacacttctggaacgacgtgcgcggccgttatgaagaccgccgtggcgac
ctcagccggccgctgctgccgcctgccgagctgttcatgccagtggaggactgcttcgcc
cggctcaagcagtggccgcgagtggtggtcagcagcgaagacatcgaaccgggcgcgggc
cgcgagcgcttcccggcgcgcgccctgcccaacctggcgattgaggccaaggccaaccag
ccgctggccgagctggccaacttcctcgaccagttccccggccgcgtgctgttcaccgcc
gaatcggccggccgccgcgaagtgttgctggagctgctcgaacgattgaaactgcggccg
cacactgtcgacggctgggccgacttcatcaccggaagcgagcgcctggcgatcaccatc
gccccgctggatgacggcttgctgctggacgacccaggcctggccctggtcgcggaaagc
ccactgttcggccagcgcgtgatgcagcgccgccgccgcgacaagcgtggcgaaaccgcc
aacgacgcggtcatcaagaacctcaccgagctgcgcgaaggcgcaccggtggtacacatc
gaccatggcgtgggccgctacctgggcctggccaccctggaaatcgaaggccaggctgcc
gaattccttaccctggaatacgccgagaacgccaagctgtacgtgccggtggccaacctg
cacctgatcgcccgctacaccggcagcgatgatgccctggcaccgctgcaccggctgggc
tcggaagcctggcagaaggccaagcgcaaggccgccgaacaggtgcgcgacgtggccgcc
gaactgctcgacatctatgcccgccgggccgcgcgcaaagggtatgcgtttgccgacccg
tccgccgactacgccacgttcagcgccggcttcccgttcgaagaaaccccggaccagcaa
acggccatcgaggcggtgcgggctgacatgctcgcgcccaagccaatggaccgcctggtg
tgtggcgacgtcggcttcggcaagacagaagtggccatgcgggcggcgttcatcgccgtg
cacagtggccgccaggtcgccgtgctggtgcccactaccctgctcgcccagcaacactac
aacagcttccgcgaccgctttgccgactggccggtgaccgtggaggtgatgagccgcttc
aagtcggccaaggaagtggccgccgccgccgccgacctggccgaaggcaagatcgacatc
ctcatcggcacccacaagctgctgcaggacgatgtgcgcttcaaggacctgggcctggcc
atcatcgacgaagagcaccgctttggtgtgcgccagaaagagcagctcaaggcactgcgc
agcgaggtcgacatcctcaccctgaccgctacgccgatcccgcgcacgttgaacatggca
gtggccggcatgcgcgacctgtcgatcatcgccacgccgccagcgcgccgcctgtcggtg
cgcacctttgtcatggagcagaacaagagcacggtcaaggaggcactgctgcgcgaactg
ctgcgcggtggccaggtgtactacctgcacaacgatgtgaaaaccatcgaaaaatgcgcc
gccgaccttgccgaactggtgcccgaggcacgtatcggcatcggccacgggcaaatgcgc
gaacgcgagctggaacaggtgatgagcgatttctaccacaagcgcttcaacgtgctggtg
gcgtcgaccatcatcgaaaccggcatcgacgtgcctagcgccaataccatcgtcatcgag
cgcgccgacaagtttggcctggcccagctgcaccagctgcgtggccgggtcggccgtagc
caccaccaggcctacgcctacctgctgaccccaacccgacagaaagtcagcgccgacgct
gaaaaacgcctggaagccatcgccaacacccaggacctgggtgctggctttgtgctggcc
accaacgacctggaaatccgcggtgcgggcgagctgctgggcgaaggccagagcggtcag
atccaggcggtgggcttcaccctgtacatggaaatgctcgaacgcgcggtcaaggcgatc
cgcaagggtacccagccaaatctggagcaaccgcttggcggcggcccggagatcaacctg
cgcctgccagcactgatccccgaggactacctgcctgacgtgcatgcacggctgatcctg
tacaagcgcattgcttcggccgccgacgaagaaggcctcaaggacctgcaagtggaaatg
atcgaccgcttcggtctgctgccagaaccgaccaagaacctgatgcgcctgacttcgctc
aagctgcaggcggaaaagctcggcatcaagaaagtcgatgctggccccaatggtggcaag
ctcgagttcgaagccgaaaccccggtcgacccgctgaccctgatcaagctgatccagggc
cagcccaaacgctacaagttcgaaggcgctacccagttccgcttccttgtgccgatggaa
cgccccgacgaacgtttcaacaccctggaggcgctgttcgagcgcctgaccccacagcct
gcctaa
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