Pseudomonas putida H8234: L483_11550
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Entry
L483_11550 CDS
T02706
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pput
Pseudomonas putida H8234
Pathway
pput03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pput00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L483_11550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pput03400
]
L483_11550 (ligD)
Enzymes [BR:
pput01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L483_11550 (ligD)
DNA repair and recombination proteins [BR:
pput03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L483_11550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGN78849
LinkDB
All DBs
Position
complement(2493728..2496193)
Genome browser
AA seq
821 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRARPRSAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGSIPEGHYGAGDVIVWDRGVWEPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQAHSETDYSIVEALPDSVL
SERTLPPRSPAKATTTRHKRAGRKALPDILQPQLATLVDSPPSGDWRYEVKFDGYRILAR
IDGDDIRLFTRNGHDWSAKMPRQVEALKALGLDSAWLDGEMVVVDDNGVADFQALQNAFD
TEHDERITYYLFDLPWLGGEDLRALTLQQRRATLARLLEGHASQVLRYSADFEEPVESLL
DSACRLELEGLIGKRADSPYVGRRSSDWVKLKCKQRQEFVIVGYTDPKGSRNGFGALLLA
LHDHDSGQLRYAGKVGTGFSAATLDSIHARLKPLQTDRSPLPKPPTGAEARGVHWLRPQL
LAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPTKRAAQTEPENLGTLRLTHPD
RVVDATTGTTKREVAQYYAQVADWLLPQLKDRPVALVRAPDGLSGELFFQKNAGQLHIPK
VLSYNKAQAGQAAMVLNGAESLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPALP
WKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVNHMAG
LFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELSQLKG
ANQWNIGNLHTRLAQVEDPWAEMGKTRQSITLRMRKQLGIA
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacccctacaggagtaccagcgcaagcgcgacttcaatgccacgcccgagccg
gctggtaaacgcgcccgcccccgctcggcccatgcgctgcagtactgcatccagaagcac
gatgccagccacctgcattacgattttcgcctggagctcgacggcaccctcaagagctgg
gccatccccaagggcccctcactggatcccaaggtccggcgcctggcagtgcatgtagag
gatcatccgctggattacgccaacttcgaaggaagcatccctgaaggccactacggcgcc
ggcgatgtcattgtctgggaccggggtgtgtgggagcccgagggcgacccgcgcgaagcc
tatgcaaagggcaagctgcgctttcgcctgcagggcgagaaactgtcaggggtctggaac
ctgttccgcactcacctggccggcaagaaagagcagtggatgctggtcaagtcccatgat
gggcaggcacacagtgaaacggactacagcattgtcgaggccctgccggacagcgtgctg
agcgagcgcaccctgcccccgcgcagcccggccaaggcgaccaccaccaggcacaagcga
gccggccgcaaagccctgccggatatactccagccgcaactggccacgttggtcgattcc
ccgccaagcggcgattggcgctacgaagtcaagttcgacggctaccgcatcctggcgcgt
atcgacggtgacgacatacgcctgtttacccgtaatggccacgactggagtgcgaagatg
ccccggcaggtcgaggcgctcaaggccctgggcctcgactcggcatggctggacggcgag
atggtagtggtcgacgacaacggcgtggccgacttccaggctttgcagaacgccttcgac
accgagcatgacgagcgcatcacctactacctgttcgacctgccctggctgggcggtgag
gacctgcgagcactgacgctgcaacagcgccgtgcaaccctcgcccggttgctggaaggc
catgcatcgcaggtactcaggtattccgccgattttgaggagcccgtcgagtcactgctc
gacagcgcctgccgactggaactcgaaggcttgatcggtaaacgtgccgacagcccttac
gttggccggcgcagtagcgactgggtcaagctcaagtgcaagcagcgccaggaattcgtg
atcgtcggctacaccgaccccaagggcagccgcaacggcttcggcgccctgctgctggcc
ttgcacgaccacgacagcggccagctgcgttacgccggcaaggtcggcacgggcttcagc
gcggccaccctggacagcattcacgcccgcctcaagccgttgcaaaccgacagatccccc
ttgccgaaaccacctaccggtgccgaagcccgcggcgtgcattggctcaggccacagctg
ctggcagaggtcgcctatgcccagatgacccgcgaaggcatcgtgcgtcactcggtgttc
cacggcctgcgtgacgataaacctgccaccgccatcgacctggagcgagcaatgcccacc
aagcgcgcagcacagacagaacccgagaacctgggcaccctgcgcctgacccaccccgac
cgcgtggtcgacgcaaccacgggcaccaccaagcgcgaggtcgcccagtactacgctcag
gtcgccgactggctgctgccccagctcaaggaccgacctgtagccctcgtccgcgccccg
gatggtctgagcggcgaactgttctttcagaaaaacgccggccagctgcatattcccaag
gtgctcagctacaacaaggcccaggccggccaggcggccatggtgctcaacggcgccgaa
agcctgctgggcgcggtgcagatgaacacgcttgaactgcacacctggaatgccaccacc
aaggatttcgataaacccgaccgctttgtcctcgacctggaccctgacccggcgctgccg
tggaaagccatgctcgaggccacccagctgacccttaccctgctcgacgaactgggcctg
aaggtgtttctcaagaccagcggcggcaagggcatgcacctcgtcgtacccttgacccga
cgcgctggctgggacgaggtgaaggacttcagccatgccctggtcaatcacatggccggg
ctgttccctgatcgtctcagcgccgtgtccgggccgaagaaccgggtcgggcggatcttt
atcgactacctgcgtaacggcaagggtgccaccaccgtcgccgcctactcgctgcgggcc
cgcgagggcctgccggtgtcggtgccgatctggcgtgaggaactgagccagctcaagggt
gccaaccagtggaacatcggcaaccttcacacgcggcttgcacaggtcgaagacccgtgg
gccgaaatgggcaagacacgccagtcgatcacgttgcgtatgcgcaagcagttgggaatt
gcatga
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